hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-14480037/chunk_1/iprscan-20090525-14480037.nocrc
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Query sequence: fj04323
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    190.0    5.2e-54   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    185.3    1.4e-52   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3      71   140 ..     1    69 [.    43.8  1.6e-11
PF00076.12.ls   1/3      71   145 ..     1    74 []    44.7  2.9e-10
PF00076.12.fs   2/3     163   234 ..     1    74 []    58.6  1.1e-15
PF00076.12.ls   2/3     163   234 ..     1    74 []    60.6  4.8e-15
PF00076.12.fs   3/3     460   531 ..     1    74 []    82.8  1.8e-22
PF00076.12.ls   3/3     460   531 ..     1    74 []    84.8  2.5e-22

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 71 to 140: score 43.8, E = 1.6e-11
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       fVg +p++ +e++Lk+lF+++G +  i++ rD +++  +skG++FV
     fj04323    71    MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 117  

                   eFedeedAekAldalnG.kelgg<-*
                   +F +  +A +A  al++ k+l g   
     fj04323   118 TFYTRKAALEAQNALHNiKTLPG    140  

PF00076.12.ls: domain 1 of 3, from 71 to 145: score 44.7, E = 2.9e-10
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       fVg +p++ +e++Lk+lF+++G +  i++ rD +++  +skG++FV
     fj04323    71    MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 117  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F +  +A +A  al++ k+l g    +   
     fj04323   118 TFYTRKAALEAQNALHNiKTLPGMHHPI    145  

PF00076.12.fs: domain 2 of 3, from 163 to 234: score 58.6, E = 1.1e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+g  ++ ++e d++ +Fs+fG+ie+++i r      g s+G+aFV
     fj04323   163    LFIGMVSKKCNENDIRVMFSPFGQIEECRILRG---PDGLSRGCAFV 206  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F +   A+ A++a++ +++ +g+   +   
     fj04323   207 TFSTRAMAQNAIKAMHQsQTMEGCSSPI    234  

PF00076.12.ls: domain 2 of 3, from 163 to 234: score 60.6, E = 4.8e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+g  ++ ++e d++ +Fs+fG+ie+++i r      g s+G+aFV
     fj04323   163    LFIGMVSKKCNENDIRVMFSPFGQIEECRILRG---PDGLSRGCAFV 206  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F +   A+ A++a++ +++ +g+   +   
     fj04323   207 TFSTRAMAQNAIKAMHQsQTMEGCSSPI    234  

PF00076.12.fs: domain 3 of 3, from 460 to 531: score 82.8, E = 1.8e-22
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+  Lp++  ++d+ ++F +fG ++s+k+++D  ++t+ sk f+FV
     fj04323   460    LFIYHLPQEFGDQDILQMFMPFGNVISAKVFID--KQTNLSKCFGFV 504  

                   eFedeedAekAldalnGkelggrelrv<-*
                    ++++ +A++A++a+nG+++g ++l+v   
     fj04323   505 SYDNPVSAQAAIQAMNGFQIGMKRLKV    531  

PF00076.12.ls: domain 3 of 3, from 460 to 531: score 84.8, E = 2.5e-22
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+  Lp++  ++d+ ++F +fG ++s+k+++D  ++t+ sk f+FV
     fj04323   460    LFIYHLPQEFGDQDILQMFMPFGNVISAKVFID--KQTNLSKCFGFV 504  

                   eFedeedAekAldalnGkelggrelrv<-*
                    ++++ +A++A++a+nG+++g ++l+v   
     fj04323   505 SYDNPVSAQAAIQAMNGFQIGMKRLKV    531  

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