hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-14480037/chunk_1/iprscan-20090525-14480037.nocrc
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Query sequence: fj04323
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 253.1    2.2e-71   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/3      70   148 ..     1   121 []    74.3  1.5e-17
SM00360    2/3     162   237 ..     1   121 []    89.2  5.1e-22
SM00360    3/3     459   532 ..     1   121 []    89.6  3.6e-22

Alignments of top-scoring domains:
SM00360: domain 1 of 3, from 70 to 148: score 74.3, E = 1.5e-17
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      + fVg +  p +++e++L+elF              +++G v  + +
     fj04323    70    KMFVGQI--PRSWSEKELKELF--------------EPYGAVYQINV 100  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +rd+                    ++  +skG++FV+F ++ +A  A  +
     fj04323   101 LRDRS-------------------QNPPQSKGCCFVTFYTRKAALEA--Q 129  

                   ealnaskGkeledgGrptlglrVe<-*
                   +al++ k  +   + +p   ++ +   
     fj04323   130 NALHNIKTLPG--MHHP---IQMK    148  

SM00360: domain 2 of 3, from 162 to 237: score 89.2, E = 5.1e-22
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+g +  +++++e d+r +F              s+fG ++++ri
     fj04323   162    KLFIGMV--SKKCNENDIRVMF--------------SPFGQIEECRI 192  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r +d                      G s+G+aFV+F++++ A++A  i
     fj04323   193 LRGPD----------------------GLSRGCAFVTFSTRAMAQNA--I 218  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a++ s  +e   +  p   + V+   
     fj04323   219 KAMHQSQTMEG--CSSP---IVVK    237  

SM00360: domain 3 of 3, from 459 to 532: score 89.6, E = 3.6e-22
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+  L  p +  ++d+ ++F               +fG+v+s+++
     fj04323   459    NLFIYHL--PQEFGDQDILQMF--------------MPFGNVISAKV 489  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + dk+                     T+ sk+f+FV ++++ +A++A  i
     fj04323   490 FIDKQ---------------------TNLSKCFGFVSYDNPVSAQAA--I 516  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a+n   G+++  g ++   l+V+   
     fj04323   517 QAMN---GFQI--GMKR---LKVQ    532  

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