hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07452120/chunk_1/iprscan-20080810-07452120.nocrc
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Query sequence: fj04618
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00375.9.fs Sodium:dicarboxylate symporter family          201.3      2e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00375.9.fs   1/1      59   199 ..     1   145 [.   201.3    2e-57

Alignments of top-scoring domains:
PF00375.9.fs: domain 1 of 1, from 59 to 199: score 201.3, E = 2e-57
                   *->LvlqiliglvLGillGailrelseklsdkvveylaplGdiFvRlLKM
                      + l++++++v+G  l+++lr+++  l +++ +y++++G++++R+L+M
     fj04618    59    FILLTVSAVVIGVSLAFALRPYQ--LTYRQIKYFSFPGELLMRMLQM 103  

                   IVlPlvissLVtGiAglgDakklGklGgkaiiYfeitTtiAaalGiilan
                   +VlPl++ssLVtG+A+l D k+ G++G++a +Y+++tT+iA+ +Gi+++ 
     fj04618   104 LVLPLIVSSLVTGMASL-DNKATGRMGMRAAVYYMVTTIIAVFIGILMVT 152  

                   viqPGagvlisqlsrggatvdisavdaflDlarnlFPenlvqailsii<-
                   +i+PG+g  +++l+r+g    i ++daf Dl+rn+FP+nlv+a+++++  
     fj04618   153 IIHPGKG-SKEGLHREGRIETIPTADAFMDLIRNMFPPNLVEACFKQV   199  

                   *
                    
     fj04618     -   -    

//