hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09514137/chunk_1/iprscan-20090618-09514137.nocrc
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Query sequence: fj04875
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00368.9.ls Hydroxymethylglutaryl-coenzyme A reductas  1081.2          0   1
PF00368.9.fs Hydroxymethylglutaryl-coenzyme A reductas  1079.4          0   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00368.9.fs   1/1     513   909 ..     1   403 []  1079.4        0
PF00368.9.ls   1/1     513   909 ..     1   403 []  1081.2        0

Alignments of top-scoring domains:
PF00368.9.fs: domain 1 of 1, from 513 to 909: score 1079.4, E = 0
                   *->kiplYkLEsvLgDpeRAVeiRReilskeatakklearLdkLPYenYD
                      +ip+YkLE+ ++++eR+V+iRR++lsk  ++ ++++ L++LPY++Y+
     fj04875   513    HIPAYKLETLMETHERGVSIRRQLLSK--KLSEPSS-LQYLPYRDYN 556  

                   YskVlGaCCENVIGYvPiPVGvAGPLlLDGkeyyvPMATTEGcLVASTnR
                   Ys+V+GaCCENVIGY+PiPVGvAGPL+LD ke++vPMATTEGcLVASTnR
     fj04875   557 YSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNR 606  

                   GckAInlsGGakSvllrdGMTRAPVVrFPsarrAgeaklWlespeNfevl
                   Gc+AI+l+GGa+S++l+dGMTR+PVVr+P+a++++e+k+Wle+ e+f+v+
     fj04875   607 GCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVI 656  

                   KkaFdSTSRFARLqsikitlAGrnlYiRFkatTGDAMGMNMvSKGvEnAL
                   K+aFdSTSRFARLq++++ +AGrnlYiRF+++ GDAMGMNM+SKG+E+AL
     fj04875   657 KEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKAL 706  

                   evLqedaFPDMeviSlSGNyCTDKKPAAiNWIeGRGKsVVcEAtIpadvV
                   + L e+ FP+M+++++SGNyCTDKKPAAiNWIeGRGKsVVcEA+Ipa+vV
     fj04875   707 SKLHEY-FPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVV 755  

                   rkVLKTtveaLVeLNiaKNLiGSAmAGSiGmmGfNAHAANIVTAiFiATG
                   r+VLKTt+ea++e+Ni+KNL+GSAmAGSiG  G+NAHAANIVTAi+iA+G
     fj04875   756 REVLKTTTEAMIEVNINKNLVGSAMAGSIG--GYNAHAANIVTAIYIACG 803  

                   QDpAQNVeSSnCiTlMevvgedgeDLyiSVTMPSIEVGTVGGGTvLapQs
                   QD+AQNV+SSnCiTlMe+ g+++eDLyiS+TMPSIE+GTVGGGT+L pQ+
     fj04875   804 QDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQ 853  

                   ACLdlLGVkGankesPGeNArqLArIVAatVLAGELSLMsALaaGhLVkS
                   ACL++LGV+Ga+k++PGeNArqLArIV++tV+AGELSLM+ALaaGhLVkS
     fj04875   854 ACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKS 903  

                   HMkhNR<-*
                   HM hNR   
     fj04875   904 HMIHNR    909  

PF00368.9.ls: domain 1 of 1, from 513 to 909: score 1081.2, E = 0
                   *->kiplYkLEsvLgDpeRAVeiRReilskeatakklearLdkLPYenYD
                      +ip+YkLE+ ++++eR+V+iRR++lsk  ++ ++++ L++LPY++Y+
     fj04875   513    HIPAYKLETLMETHERGVSIRRQLLSK--KLSEPSS-LQYLPYRDYN 556  

                   YskVlGaCCENVIGYvPiPVGvAGPLlLDGkeyyvPMATTEGcLVASTnR
                   Ys+V+GaCCENVIGY+PiPVGvAGPL+LD ke++vPMATTEGcLVASTnR
     fj04875   557 YSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNR 606  

                   GckAInlsGGakSvllrdGMTRAPVVrFPsarrAgeaklWlespeNfevl
                   Gc+AI+l+GGa+S++l+dGMTR+PVVr+P+a++++e+k+Wle+ e+f+v+
     fj04875   607 GCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVI 656  

                   KkaFdSTSRFARLqsikitlAGrnlYiRFkatTGDAMGMNMvSKGvEnAL
                   K+aFdSTSRFARLq++++ +AGrnlYiRF+++ GDAMGMNM+SKG+E+AL
     fj04875   657 KEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKAL 706  

                   evLqedaFPDMeviSlSGNyCTDKKPAAiNWIeGRGKsVVcEAtIpadvV
                   + L e+ FP+M+++++SGNyCTDKKPAAiNWIeGRGKsVVcEA+Ipa+vV
     fj04875   707 SKLHEY-FPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVV 755  

                   rkVLKTtveaLVeLNiaKNLiGSAmAGSiGmmGfNAHAANIVTAiFiATG
                   r+VLKTt+ea++e+Ni+KNL+GSAmAGSiG  G+NAHAANIVTAi+iA+G
     fj04875   756 REVLKTTTEAMIEVNINKNLVGSAMAGSIG--GYNAHAANIVTAIYIACG 803  

                   QDpAQNVeSSnCiTlMevvgedgeDLyiSVTMPSIEVGTVGGGTvLapQs
                   QD+AQNV+SSnCiTlMe+ g+++eDLyiS+TMPSIE+GTVGGGT+L pQ+
     fj04875   804 QDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQ 853  

                   ACLdlLGVkGankesPGeNArqLArIVAatVLAGELSLMsALaaGhLVkS
                   ACL++LGV+Ga+k++PGeNArqLArIV++tV+AGELSLM+ALaaGhLVkS
     fj04875   854 ACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKS 903  

                   HMkhNR<-*
                   HM hNR   
     fj04875   904 HMIHNR    909  

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