hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09514137/chunk_1/iprscan-20090618-09514137.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj04875 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR00920 2A060605: 3-hydroxy-3-methylglutaryl-c 2446.6 0 1 TIGR00533 HMG_CoA_R_NADP: 3-hydroxy-3-methylglut 726.3 6.7e-216 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR00920 1/1 39 926 .] 1 988 [] 2446.6 0 TIGR00533 1/1 500 909 .. 1 419 [] 726.3 6.7e-216 Alignments of top-scoring domains: TIGR00920: domain 1 of 1, from 39 to 926: score 2446.6, E = 0 *->MlsRLFRAhGqFcASHPWEVIVaTLTLTiCMLsGGmnqftGlekRiG MlsRLFR+hG+F+ASHPWEVIV+T+TLTiCM+s mn+ftG++k fj04875 39 MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMS--MNMFTGNNK--- 80 HstAsAAAAGsGsGAGsGAsGtiPPssmGGsAtssRHRPicGWnyeCpPk icGWnyeCp k fj04875 81 ---------------------------------------ICGWNYECP-K 90 leEeylssDvIvmTIvRCiAVLYiYyQFcnLrqLGSKYILGIAGLFTiFS +eE++lssD+I++TI+RCiA+LYiY+QF+nLrqLGSKYILGIAGLFTiFS fj04875 91 FEEDVLSSDIIILTITRCIAILYIYFQFQNLRQLGSKYILGIAGLFTIFS 140 SFvFStaVIhFLGseltgLneALpFFLLLIDLSkAsaLakFALSSnSQdE SFvFSt+VIhFL++eltgLneALpFFLLLIDLS+As LakFALSSnSQdE fj04875 141 SFVFSTVVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDE 190 VrdNIARGmAiLGPTITLDTvVetLVIGVGTlSGVRrLEVlCCFgclSVl Vr+NIARGmAiLGPT+TLD++Ve+LVIGVGT+SGVR+LE++CCFgc+SVl fj04875 191 VRENIARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVL 240 aNYvVFMTFfPACLSLvLELSRsgreGRPvWhlskfalvLesLeEEDqKP aNY+VFMTFfPAC+SLvLELSR++reGRP+W+ls+fa+vLe eEE +KP fj04875 241 ANYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFARVLE--EEE-NKP 287 NPVvQRVKmIMstGLvLVHAHSRWvssPSsqnsTtlvdkdltltLdlnvs NPV+QRVKmIMs+GLvLVHAHSRW+++PS+qnsT ++++l+Ld+nvs fj04875 288 NPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTAD-TSKVSLGLDENVS 336 kriepSmpLWqfylsrlltmdldyivTlilaivLavkyIFFsqretYPes kriepS++LWqfyls++++md+++++Tl+la++LavkyIFF+q+et es fj04875 337 KRIEPSVSLWQFYLSKMISMDIEQVITLSLALLLAVKYIFFEQTET--ES 384 tvslknGdpvvnPvsdqkkqsevvcirelassastidvsvvEeekdtsks t+slkn p+++Pv++qkk ++++c+re+ +++ + +vEee++ ++ fj04875 385 TLSLKN--PITSPVVTQKKVPDNCCRREPMLVRNNQKCDSVEEETGINRE 432 aavetikplpeetssasPvsshsvvearfvvgskysgseqeelealkeel ++ve+ikpl+ et + +a+fvvg + s + ++++e++ fj04875 433 RKVEVIKPLVAETDTPN--------RATFVVGNS-SLLDTSSVLVTQEPE 473 veppketeLkaPRPvdECLeILnstekGsGaqaLSDaEvisLVnAkGtHI +e+p e PRP++ECL+IL ++ekG a++LSDaE+i+LVnAk HI fj04875 474 IELPRE-----PRPNEECLQILGNAEKG--AKFLSDAEIIQLVNAK--HI 514 PaYKLEtvldnPERGVaIRRQilskklplpdGaLdkLPYknYDYskVmGA PaYKLEt+++++ERGV+IRRQ+lskkl +p+ +L++LPY++Y+Ys+VmGA fj04875 515 PAYKLETLMETHERGVSIRRQLLSKKLSEPS-SLQYLPYRDYNYSLVMGA 563 CCENVIGYmPiPVGVAGPLlLDGkeyqVPMATTEGCLVASTNRGCRALml CCENVIGYmPiPVGVAGPL+LD ke+qVPMATTEGCLVASTNRGCRA++l fj04875 564 CCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGL 613 gGGvrSrvlaDGMTRGPvVRlPsaarAaEvKaWlevpENFavIKdaFDST gGG++SrvlaDGMTRGPvVRlP+a+++aEvKaWle+ E+FavIK+aFDST fj04875 614 GGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDST 663 SRFARLkkihiavAGRnLyIRFqAkTGDAMGMNMiSKgTEqALaelQevF SRFARL+k+h+ +AGRnLyIRFq+ GDAMGMNMiSKgTE+AL +l e F fj04875 664 SRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYF 713 PdmeIlSLSGNyCTDKKPAAINWIEGRGKsVVCEAiiPAkivrsVLKTsa P+m+Il++SGNyCTDKKPAAINWIEGRGKsVVCEA+iPAk+vr+VLKT++ fj04875 714 PEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTT 763 eALvdvNInKNLvGSAMAGSIGGfNAHAANIVTAIyIATGQDaAQNVgSS eA+++vNInKNLvGSAMAGSIGG+NAHAANIVTAIyIA+GQDaAQNVgSS fj04875 764 EAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSS 813 NCmTlMEawGptgeDLYiSCTMPSIEiGTVGGGTvLpPQsACLqMLGVrG NC+TlMEa+Gpt+eDLYiSCTMPSIEiGTVGGGT+L+PQ+ACLqMLGV+G fj04875 814 NCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQG 863 AnetrPGeNAkqLArIVCaTVMAGELSLMaALAAGHLVKSHMrHNRSsin A++++PGeNA+qLArIVC+TVMAGELSLMaALAAGHLVKSHM HNRS+in fj04875 864 ACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHNRSKIN 913 lqsalPsiDevathRRsksvDFsaLkeslavlpgTCtkkSa<-* lq+ l+g Ctkk a fj04875 914 LQD----------------------------LQGACTKKTA 926 TIGR00533: domain 1 of 1, from 500 to 909: score 726.3, E = 6.7e-216 *->meNykeilekllnGkiklYelekklgDttrAveiRRkfieklagaPv ++ ei++++ i+ Y+le ++ +r v iRR+ ++k+ P fj04875 500 LSD-AEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPS 545 lklehlpnysiDyerafkkniENvIGvvqiPlGvaGPLkidGEyAdgeYy l+ lp++ + y ++++++ENvIG+++iP+GvaGPL d e+ fj04875 546 -SLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDE----KEFQ 590 iPlATtEGaLVASvnRGCsvItkgGGATvrvtkDgMTRaPvvrtksvvea +P+ATtEG+LVAS nRGC++I gGGA rv DgMTR+Pvvr + ++ fj04875 591 VPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDS 640 lkvreWidseEnqnaikeaaeSTtRhgkLvkIePillaGdllypRFvttT +v+ W++ E++ ikea++ST+R+++L+k + +aG++ly RF + fj04875 641 AEVKAWLETSEGFAVIKEAFDSTSRFARLQKLH-TSIAGRNLYIRFQSRS 689 GDaMGMNMvtiatEkalkllveElgkEgieVktvavSGNlCtDKKPaaiN GDaMGMNM++++tEkal l e + ++++ avSGN+CtDKKPaaiN fj04875 690 GDAMGMNMISKGTEKALSKLHEYF--PEMQI--LAVSGNYCTDKKPAAIN 735 lIeGRGKSivAEvtipgdvVekvLKttvsAlvEvNiaKNliGSAiagSmG +IeGRGKS+v E+ ip +vV+ vLKtt +A++EvNi KNl+GSA+agS+G fj04875 736 WIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIG 785 GFNAHyANiigAiFLAtGQDeAhiVEgSlgiTlaevEvdG....DLyfsV G+NAH+ANi++Ai+ A GQD A++V +S++iTl+e G++++DLy+s fj04875 786 GYNAHAANIVTAIYIACGQDAAQNVGSSNCITLME--ASGptneDLYISC 833 slPdvpvgTvGGGTvlEtqgecLdlLGvrGPhatePgnkarklAeIVgaA ++P++++gTvGGGT l +q++cL +LGv G +Pg +ar+lA+IV + fj04875 834 TMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGT 883 VLAGELSLlgALAAGHLvkaHselgR<-* V+AGELSL++ALAAGHLvk+H+ ++R fj04875 884 VMAGELSLMAALAAGHLVKSHMIHNR 909 //