hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-08024048/chunk_1/iprscan-20080810-08024048.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj04996 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 324.2 2.1e-94 6 PF00028.8.ls Cadherin domain 318.2 1.4e-92 5 PF08266.2.fs Cadherin-like 152.4 3.5e-44 1 PF08266.2.ls Cadherin-like 144.2 3.3e-40 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 1 75 [. 1 84 [] 144.2 3.3e-40 PF08266.2.fs 1/1 1 75 [. 10 84 .] 152.4 3.5e-44 PF00028.8.fs 2/6 101 196 .. 1 107 [] 56.7 1.2e-15 PF00028.8.ls 1/5 101 196 .. 1 107 [] 58.5 2e-14 PF00028.8.fs 3/6 210 301 .. 1 107 [] 90.7 2.2e-25 PF00028.8.ls 2/5 210 301 .. 1 107 [] 92.5 1.2e-24 PF00028.8.fs 4/6 315 406 .. 1 107 [] 43.5 7.2e-12 PF00028.8.ls 3/5 315 406 .. 1 107 [] 45.4 1.8e-10 PF00028.8.ls 4/5 420 516 .. 1 107 [] 72.8 1e-18 PF00028.8.fs 5/6 420 516 .. 1 107 [] 70.9 1e-19 PF00028.8.ls 5/5 538 628 .. 1 107 [] 49.0 1.5e-11 PF00028.8.fs 6/6 545 628 .. 9 107 .] 52.9 1.5e-14 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 1 to 75: score 144.2, E = 3.3e-40 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF Et++GsfVG++AKDLGL+++eLa+Rg+Ri+S+g++q+F fj04996 1 ---------ETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLF 38 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L++++RiDREe+C+qs++C++++++l+E+ fj04996 39 ALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMED 75 PF08266.2.fs: domain 1 of 1, from 1 to 75: score 152.4, E = 3.5e-44 *->EterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyFqlnletGdL Et++GsfVG++AKDLGL+++eLa+Rg+Ri+S+g++q+F+ln+++G+L fj04996 1 ETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSL 47 lvnERiDREeLCgqsepCvLhlevllEn<-* ++++RiDREe+C+qs++C++++++l+E+ fj04996 48 VTAGRIDREEICAQSARCLVNFNILMED 75 PF00028.8.fs: domain 2 of 6, from 101 to 196: score 56.7, E = 1.2e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ ++En+++G + A D+D g+N+ +Y ++++ +F+ fj04996 101 INVKIMENTAPGVRFPLSEAGDPD--VGTNSLQSYQLSPNR---HFS 142 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg + ++Gd +g++ +++ + + LDREe + ++L+ A+D+ g fj04996 143 LAVQSGD-DGTkypeLVLERVLDREEE--RVHHLVFTASDG-------GD 182 pplsstatvtitVl<-* pp+ssta + +tV fj04996 183 PPRSSTAHIQVTVV 196 PF00028.8.ls: domain 1 of 5, from 101 to 196: score 58.5, E = 2e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ ++En+++G + A D+D g+N+ +Y ++++ +F+ fj04996 101 INVKIMENTAPGVRFPLSEAGDPD--VGTNSLQSYQLSPNR---HFS 142 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg + ++Gd +g++ +++ + + LDREe + ++L+ A+D+ g fj04996 143 LAVQSGD-DGTkypeLVLERVLDREEE--RVHHLVFTASDG-------GD 182 pplsstatvtitVl<-* pp+ssta + +tV fj04996 183 PPRSSTAHIQVTVV 196 PF00028.8.fs: domain 3 of 6, from 210 to 301: score 90.7, E = 2.2e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y+++vpEn+pvGt++ltv+A+D D +g Ng ++Ys+ + p+ +++ fj04996 210 YQVTVPENVPVGTRLLTVHAIDLD--EGVNGEVTYSFRKITPklPKM 254 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F++++ tG+ ist + LD+Ee+ Ye v A+D+ p+ fj04996 255 FHLNSLTGE----ISTLEGLDYEET--AFYEMEVQAQDG---------PG 289 lsstatvtitVl<-* + a v itVl fj04996 290 SLTKAKVLITVL 301 PF00028.8.ls: domain 2 of 5, from 210 to 301: score 92.5, E = 1.2e-24 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y+++vpEn+pvGt++ltv+A+D D +g Ng ++Ys+ + p+ +++ fj04996 210 YQVTVPENVPVGTRLLTVHAIDLD--EGVNGEVTYSFRKITPklPKM 254 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F++++ tG+ ist + LD+Ee+ Ye v A+D+ p+ fj04996 255 FHLNSLTGE----ISTLEGLDYEET--AFYEMEVQAQDG---------PG 289 lsstatvtitVl<-* + a v itVl fj04996 290 SLTKAKVLITVL 301 PF00028.8.fs: domain 4 of 6, from 315 to 406: score 43.5, E = 7.2e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s s+pE++p Gt ++ + +D+D +g Ng ++ i ++ p F+ fj04996 315 LSSSIPEDTPLGTVIALFYLQDRD--SGKNGEVTCTIPENLP---FK 356 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ + dn + ttk+LDRE+ + Y++t++AtD+ g+ppls fj04996 357 LEK-SIDNYYRLVTTKNLDRETL--SLYNITLKATDG-------GTPPLS 396 statvtitVl<-* ++ + +V fj04996 397 RETHIFMQVA 406 PF00028.8.ls: domain 3 of 5, from 315 to 406: score 45.4, E = 1.8e-10 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s s+pE++p Gt ++ + +D+D +g Ng ++ i ++ p F+ fj04996 315 LSSSIPEDTPLGTVIALFYLQDRD--SGKNGEVTCTIPENLP---FK 356 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ + dn + ttk+LDRE+ + Y++t++AtD+ g+ppls fj04996 357 LEK-SIDNYYRLVTTKNLDRETL--SLYNITLKATDG-------GTPPLS 396 statvtitVl<-* ++ + +V fj04996 397 RETHIFMQVA 406 PF00028.8.ls: domain 4 of 5, from 420 to 516: score 72.8, E = 1e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ys+ + En p+G ++ vtA+D+D + +N++i+Ys+ ++ ++ + fj04996 420 YSVYIAENNPRGASIFLVTAQDHD--SEDNAQITYSLAEDTIqgapv 464 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I++dtG+ ++ ++ D+E+ +e L v A D+ g fj04996 465 SSYVSINSDTGV----LYALQSFDYEQL--RELQLRVTAHDS-------G 501 gpplsstatvtitVl<-* pplss ++ Vl fj04996 502 DPPLSSNMSLSLFVL 516 PF00028.8.fs: domain 5 of 6, from 420 to 516: score 70.9, E = 1e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ys+ + En p+G ++ vtA+D+D + +N++i+Ys+ ++ ++ + fj04996 420 YSVYIAENNPRGASIFLVTAQDHD--SEDNAQITYSLAEDTIqgapv 464 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I++dtG+ ++ ++ D+E+ +e L v A D+ g fj04996 465 SSYVSINSDTGV----LYALQSFDYEQL--RELQLRVTAHDS-------G 501 gpplsstatvtitVl<-* pplss ++ Vl fj04996 502 DPPLSSNMSLSLFVL 516 PF00028.8.ls: domain 5 of 5, from 538 to 628: score 49.0, E = 1.5e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + +p G v+ v A+D+D +g+N+ ++Y +l+ +++g F+ fj04996 538 MELAPRSAEP-GYLVTKVVAVDKD--SGQNAWLSYLLLKASEPGLFA 581 IdpdtGdnegiisttkp.LDREeifngeYeLtveAtDadpllasgggppl + +tG+ ++t++ LDR + + +L+v ++D+ g+ppl fj04996 582 VGLYTGE----VRTARAlLDRDAL--KQ-SLVVAVQDH-------GQPPL 617 sstatvtitVl<-* s+t+t+t+ V fj04996 618 SATVTLTVAVA 628 PF00028.8.fs: domain 6 of 6, from 545 to 628: score 52.9, E = 1.5e-14 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+D+D +g+N+ ++Y +l+ +++g F++ +tG+ fj04996 545 AEPGYLVTKVVAVDKD--SGQNAWLSYLLLKASEPGLFAVGLYTGE- 588 egiisttkp.LDREeifngeYeLtveAtDadpllasgggpplsstatvti ++t++ LDR + + +L+v ++D+ g+ppls+t+t+t+ fj04996 589 ---VRTARAlLDRDAL--KQ-SLVVAVQDH-------GQPPLSATVTLTV 625 tVl<-* V fj04996 626 AVA 628 //