hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08024048/chunk_1/iprscan-20080810-08024048.nocrc
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Query sequence: fj04996
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 429.6   1.6e-124   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6       8    94 ..     1   121 []    11.9     0.16
SM00112    2/6     118   203 ..     1   121 []    78.0  1.1e-18
SM00112    3/6     227   308 ..     1   121 []    96.4  3.4e-24
SM00112    4/6     332   413 ..     1   121 []    81.9  7.9e-20
SM00112    5/6     437   523 ..     1   121 []   100.3  2.2e-25
SM00112    6/6     554   632 ..     1   121 []    61.0  1.5e-13

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 8 to 94: score 11.9, E = 0.16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  + +D g   e  +      +  + ++  ++++++lF++++++G 
     fj04996     8    VGDIAKDLG--LEPRE------LAERGVRiisrgrtqLFALNQRSG- 45   

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              ++t++++DREe++ +  +      ++++   D+ +    
     fj04996    46 ----------SLVTAGRIDREEICAQSAR---CLVNFNILMEDKMN---- 78   

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                l    ++ v+++D+NDN P   
     fj04996    79 -------------LY---PIDVEIIDINDNVP    94   

SM00112: domain 2 of 6, from 118 to 203: score 78.0, E = 1.1e-18
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetG...tngp
                        A D+D g   +N+        +Y+++++++Fs+  ++G+++t++p
     fj04996   118    SEAGDPDVG---TNSL------QSYQLSPnrHFSLAVQSGddgTKYP 155  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++++ + LDREe           +++L+ +A+DgG pp     
     fj04996   156 -------ELVLERVLDREEE---------RVHHLVFTASDGGDPP----- 184  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +ssta ++vtV+DvND+ P   
     fj04996   185 ----------RSSTAHIQVTVVDVNDHTP    203  

SM00112: domain 3 of 6, from 227 to 308: score 96.4, E = 3.4e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+A+D+D+g    Ng+      vtYs+   +++ +++F++++ tG  
     fj04996   227    VHAIDLDEG---VNGE------VTYSFRKitpklpkMFHLNSLTG-- 262  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+t++ LD+Ee+         + Y+++v+A+Dg g     
     fj04996   263 ---------EISTLEGLDYEET---------AFYEMEVQAQDGPG----- 289  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                 + a v +tVlDvNDNaP   
     fj04996   290 ------------SLTKAKVLITVLDVNDNAP    308  

SM00112: domain 4 of 6, from 332 to 413: score 81.9, E = 7.9e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +   D+Dsg    Ng+      vt++i ++ +F+++++  +      
     fj04996   332    FYLQDRDSG---KNGE------VTCTIPEnlPFKLEKSIDN------ 363  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ ++ttk LDRE+          s Y++t +AtDgG+pp        
     fj04996   364 --YYRLVTTKNLDRETL---------SLYNITLKATDGGTPP-------- 394  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls ++ +  +V D NDN+P   
     fj04996   395 -------LSRETHIFMQVADTNDNPP    413  

SM00112: domain 5 of 6, from 437 to 523: score 100.3, E = 2.2e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v+A D+Ds+   +N++      +tYs+ +++ ++ + +++ sI+++t
     fj04996   437    VTAQDHDSE---DNAQ------ITYSLAEdtiqgapvssYVSINSDT 474  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           ++++++++D+E+           e +L+v+A D+G pp
     fj04996   475 G-----------VLYALQSFDYEQL---------RELQLRVTAHDSGDPP 504  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss+ ++  +VlD+NDN+P   
     fj04996   505 ---------------LSSNMSLSLFVLDQNDNPP    523  

SM00112: domain 6 of 6, from 554 to 632: score 61.0, E = 1.5e-13
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+Dsg   +N++      ++Y +l  ++++lF++   tG    
     fj04996   554    VVAVDKDSG---QNAW------LSYLLLKasepgLFAVGLYTG---- 587  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          +++t+++ LDR++          +  +L+v ++D+G+pp    
     fj04996   588 -------EVRTArALLDRDAL---------K-QSLVVAVQDHGQPP---- 616  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              ls+t+t+tv V D     P   
     fj04996   617 -----------LSATVTLTVAVAD---SIP    632  

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