hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08145756/chunk_1/iprscan-20080810-08145756.nocrc
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Query sequence: fj05622
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF08499.2.fs 3'5'-cyclic nucleotide phosphodiesterase N   101.1    2.3e-28   1
PF08499.2.ls 3'5'-cyclic nucleotide phosphodiesterase N   103.0    7.9e-28   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF08499.2.fs   1/1     131   191 ..     1    63 []   101.1  2.3e-28
PF08499.2.ls   1/1     131   191 ..     1    63 []   103.0  7.9e-28

Alignments of top-scoring domains:
PF08499.2.fs: domain 1 of 1, from 131 to 191: score 101.1, E = 2.3e-28
                   *->rLlDeddelsevqsesvpdeaeVreWLastftrqvgtakskseekpk
                      ++lD++del+e++s++vp+e  Vr+WLastft+q     ++ eekpk
     fj05622   131    QILDTEDELQELRSDAVPSE--VRDWLASTFTQQARAKGRRAEEKPK 175  

                   frsvanavqagIivek<-*
                   frs+++avqagI+ve+   
     fj05622   176 FRSIVHAVQAGIFVER    191  

PF08499.2.ls: domain 1 of 1, from 131 to 191: score 103.0, E = 7.9e-28
                   *->rLlDeddelsevqsesvpdeaeVreWLastftrqvgtakskseekpk
                      ++lD++del+e++s++vp+e  Vr+WLastft+q     ++ eekpk
     fj05622   131    QILDTEDELQELRSDAVPSE--VRDWLASTFTQQARAKGRRAEEKPK 175  

                   frsvanavqagIivek<-*
                   frs+++avqagI+ve+   
     fj05622   176 FRSIVHAVQAGIFVER    191  

//