hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15304283/chunk_1/iprscan-20090416-15304283.nocrc
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Query sequence: fj05789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF02513.7.ls Spin/Ssty Family                              304.0    2.5e-88   3
PF02513.7.fs Spin/Ssty Family                              298.1    1.6e-86   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02513.7.fs   1/3      54   103 ..     1    50 []   111.8  1.9e-30
PF02513.7.ls   1/3      54   103 ..     1    50 []   113.8  4.7e-31
PF02513.7.fs   2/3     133   182 ..     1    50 []    98.7  1.6e-26
PF02513.7.ls   2/3     133   182 ..     1    50 []   100.7    4e-27
PF02513.7.fs   3/3     214   259 ..     1    50 []    87.6  2.9e-23
PF02513.7.ls   3/3     214   259 ..     1    50 []    89.6  9.1e-24

Alignments of top-scoring domains:
PF02513.7.fs: domain 1 of 3, from 54 to 103: score 111.8, E = 1.9e-30
                   *->VGkrvqHkfeekdGSktnWkGmVLaQVpinpslYfIkYdgdpviYvy
                      VG+r+qH+++e++G++t+WkG+VL+QVp+npslY+IkYdg++++Y++
     fj05789    54    VGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGL 100  

                   eLl<-*
                   eL+   
     fj05789   101 ELN    103  

PF02513.7.ls: domain 1 of 3, from 54 to 103: score 113.8, E = 4.7e-31
                   *->VGkrvqHkfeekdGSktnWkGmVLaQVpinpslYfIkYdgdpviYvy
                      VG+r+qH+++e++G++t+WkG+VL+QVp+npslY+IkYdg++++Y++
     fj05789    54    VGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGL 100  

                   eLl<-*
                   eL+   
     fj05789   101 ELN    103  

PF02513.7.fs: domain 2 of 3, from 133 to 182: score 98.7, E = 1.6e-26
                   *->VGkrvqHkfeekdGSktnWkGmVLaQVpinpslYfIkYdgdpviYvy
                      +Gk+v+H+fe +dGSk++W+GmVLa +p++  +++I+Y++dpv+Y+y
     fj05789   133    IGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179  

                   eLl<-*
                   +Ll   
     fj05789   180 QLL    182  

PF02513.7.ls: domain 2 of 3, from 133 to 182: score 100.7, E = 4e-27
                   *->VGkrvqHkfeekdGSktnWkGmVLaQVpinpslYfIkYdgdpviYvy
                      +Gk+v+H+fe +dGSk++W+GmVLa +p++  +++I+Y++dpv+Y+y
     fj05789   133    IGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179  

                   eLl<-*
                   +Ll   
     fj05789   180 QLL    182  

PF02513.7.fs: domain 3 of 3, from 214 to 259: score 87.6, E = 2.9e-23
                   *->VGkrvqHkfeekdGSktnWkGmVLaQVpinpslYfIkYdgdpviYvy
                      VGk+v+  + ++dGSk+  +GmV++QV+++ps+YfIk+d+d++iYvy
     fj05789   214    VGKQVE--YAKEDGSKR--TGMVIHQVEAKPSVYFIKFDDDFHIYVY 256  

                   eLl<-*
                   +L+   
     fj05789   257 DLV    259  

PF02513.7.ls: domain 3 of 3, from 214 to 259: score 89.6, E = 9.1e-24
                   *->VGkrvqHkfeekdGSktnWkGmVLaQVpinpslYfIkYdgdpviYvy
                      VGk+v+  + ++dGSk+  +GmV++QV+++ps+YfIk+d+d++iYvy
     fj05789   214    VGKQVE--YAKEDGSKR--TGMVIHQVEAKPSVYFIKFDDDFHIYVY 256  

                   eLl<-*
                   +L+   
     fj05789   257 DLV    259  

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