hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08272479/chunk_1/iprscan-20080810-08272479.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj05942
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00038                                                 574.9     3e-168   1
SM00214                                                  83.7    2.2e-20   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00214           1/1      35    91 ..     1    75 []    83.7  2.2e-20
SM00038           1/1    1234  1469 .]     1   240 []   574.9   3e-168

Alignments of top-scoring domains:
SM00214: domain 1 of 1, from 35 to 91: score 83.7, E = 2.2e-20
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C h  G++y+d+++Wkp+ pCqiC+C++g +vlCd+++C +  +   
     fj05942    35    CSH-LGQSYADRDVWKPE-PCQICVCDSG-SVLCDDIICDDQEL--- 75   

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                      dCpnp       e+p+GeCC   +C   
     fj05942    76 ---DCPNP-------EIPFGECCA--VC    91   

SM00038: domain 1 of 1, from 1234 to 1469: score 574.9, E = 3e-168
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                      ++ei+ sLks+n    qIE+l sP+Gs++nPAR+C+DLk+cHpelk+
     fj05942  1234    TDEIMTSLKSVNG---QIESLISPDGSRKNPARNCRDLKFCHPELKS 1277 

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWysgkskd
                   GeYWvDPNqGC+ DAikVfCn+et  geTC+s++p  +prk W++  s  
     fj05942  1278 GEYWVDPNQGCKLDAIKVFCNMET--GETCISANPLNVPRKHWWTDSSAE 1325 

                   kkhvWFgetmngGfkFsYgdsegsp.vgvvQLTFLRLLSteAsQniTYhC
                   kkhvWFge+m+gGf+FsYg +e++++v +vQL+FLRLLS++AsQniTYhC
     fj05942  1326 KKHVWFGESMDGGFQFSYGNPELPEdVLDVQLAFLRLLSSRASQNITYHC 1375 

                   KNSvAYmDeatGNlkkAlilrgsnDvElsaegnskftYeVLeDGCqkrtg
                   KNS+AYmD+a+GN+kkAl+l+gsn+ E +aegnskftY+VLeDGC+k+tg
     fj05942  1376 KNSIAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTG 1425 

                   kwgKTViEyrTkkteRLPIvDiAPsDIGGadQeFGveiGPVCFs<-*
                   +w+KTV+EyrT+k  RLPIvDiAP DIGG+dQeFGv++GPVCF+   
     fj05942  1426 EWSKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGVDVGPVCFL    1469 

//