hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-08341196/chunk_1/iprscan-20080810-08341196.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj06329 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04621.4.fs PEA3 subfamily ETS-domain transcription fa 789.9 7.3e-295 2 PF04621.4.ls PEA3 subfamily ETS-domain transcription fa 788.2 4.4e-234 1 PF00178.13.ls Ets-domain 211.5 1.8e-60 1 PF00178.13.fs Ets-domain 209.6 6.7e-60 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04621.4.ls 1/1 12 321 .. 1 411 [] 788.2 4.4e-234 PF04621.4.fs 1/2 12 278 .. 1 342 [. 675.2 3.3e-252 PF04621.4.fs 2/2 279 321 .. 368 411 .] 114.7 9.7e-44 PF00178.13.ls 1/1 322 405 .. 1 89 [] 211.5 1.8e-60 PF00178.13.fs 1/1 322 405 .. 1 89 [] 209.6 6.7e-60 Alignments of top-scoring domains: PF04621.4.ls: domain 1 of 1, from 12 to 321: score 788.2, E = 4.4e-234 *->MDGFlDQQVPYmvpPnkSrgngplerplidrKRKFvDPteLAPqDSE MDGF+DQQVPYmv+ n++rg++++e+p+++rKRKF++ ++LA +DSE fj06329 12 MDGFYDQQVPYMVT-NSQRGRNCNEKPTNVRKRKFIN-RDLA-HDSE 55 eLFQDLSQLQEtWLAEAQVPDsDEQFVPDFqSeNsLaFHsPPqtKIKkEP eLFQDLSQLQEtWLAEAQVPD+DEQFVPD+q+e+ LaFH++P +KIKkEP fj06329 56 ELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAES-LAFHGLP-LKIKKEP 103 qSPssepSlsCSqeQpLsypYGEkCLYnySAYDrKRpqvaikpltPpscs +SP+se+ ++CSqeQp++++YGEkCLYn+SAYD+K pqv+++p++Pp++s fj06329 104 HSPCSEIGSACSQEQPFKFSYGEKCLYNVSAYDQK-PQVGMRPSNPPTPS 152 ATPlSPlqhsSlathPVQKKSdAisPnstvrstAFTRTksqfhitPaeST +TP+SPl+h+S Pnst++ fj06329 153 STPVSPLHHAS--------------PNSTHT------------------- 169 DSTPqSLPkPTvqqrlFlapsppsQllhrPqvipessYpmesssrFrrpL PkP +r+F+a++ppsQ +ip+ssYpm+ +rFrr+L fj06329 170 -------PKP---DRAFPAHLPPSQ------SIPDSSYPMD--HRFRRQL 201 SepchPFpsqGaglPRearPaHAsGGGGGlYqrQmSePcvPypPPPlQgF Sepc++Fp++ +++PRe+rP+ YqrQmSeP++P+pP QgF fj06329 202 SEPCNSFPPL-PTMPREGRPM---------YQRQMSEPNIPFPP---QGF 238 KQEYHDPlYehatmsrVdvggpatqrFPlapmmiKQEptDyaydsdVpgC KQEYHDP+Yeh+tm vg++a+q+FP +p+miKQEp+D+ayds fj06329 239 KQEYHDPVYEHNTM----VGSAASQSFP-PPLMIKQEPRDFAYDS----- 278 aSiYlraegfsspaassrveGymyEKdPRsfiDDtCVVPEkfEGdvKQEG G+m+EK+PR+f+DDtCVVPEkf+Gd+KQE+ fj06329 279 --------------------GCMFEKGPRQFYDDTCVVPEKFDGDIKQEP 308 gsvFREGPPYQRRG<-* g ++REGP+YQRRG fj06329 309 G-MYREGPTYQRRG 321 PF04621.4.fs: domain 1 of 2, from 12 to 278: score 675.2, E = 3.3e-252 *->MDGFlDQQVPYmvpPnkSrgngplerplidrKRKFvDPteLAPqDSE MDGF+DQQVPYmv+ n++rg++++e+p+++rKRKF++ ++LA +DSE fj06329 12 MDGFYDQQVPYMVT-NSQRGRNCNEKPTNVRKRKFIN-RDLA-HDSE 55 eLFQDLSQLQEtWLAEAQVPDsDEQFVPDFqSeNsLaFHsPPqtKIKkEP eLFQDLSQLQEtWLAEAQVPD+DEQFVPD+q+e+ LaFH++P +KIKkEP fj06329 56 ELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAES-LAFHGLP-LKIKKEP 103 qSPssepSlsCSqeQpLsypYGEkCLYnySAYDrKRpqvaikpltPpscs +SP+se+ ++CSqeQp++++YGEkCLYn+SAYD+K pqv+++p++Pp++s fj06329 104 HSPCSEIGSACSQEQPFKFSYGEKCLYNVSAYDQK-PQVGMRPSNPPTPS 152 ATPlSPlqhsSlathPVQKKSdAisPnstvrstAFTRTksqfhitPaeST +TP+SPl+h+S Pnst++ fj06329 153 STPVSPLHHAS--------------PNSTHT------------------- 169 DSTPqSLPkPTvqqrlFlapsppsQllhrPqvipessYpmesssrFrrpL PkP +r+F+a++ppsQ +ip+ssYpm+ +rFrr+L fj06329 170 -------PKP---DRAFPAHLPPSQ------SIPDSSYPMD--HRFRRQL 201 SepchPFpsqGaglPRearPaHAsGGGGGlYqrQmSePcvPypPPPlQgF Sepc++Fp++ +++PRe+rP+ YqrQmSeP++P+pP QgF fj06329 202 SEPCNSFPPL-PTMPREGRPM---------YQRQMSEPNIPFPP---QGF 238 KQEYHDPlYehatmsrVdvggpatqrFPlapmmiKQEptDyayds<-* KQEYHDP+Yeh+tm vg++a+q+FP +p+miKQEp+D+ayds fj06329 239 KQEYHDPVYEHNTM----VGSAASQSFP-PPLMIKQEPRDFAYDS 278 PF04621.4.fs: domain 2 of 2, from 279 to 321: score 114.7, E = 9.7e-44 *->GymyEKdPRsfiDDtCVVPEkfEGdvKQEGgsvFREGPPYQRRG<-* G+m+EK+PR+f+DDtCVVPEkf+Gd+KQE+g ++REGP+YQRRG fj06329 279 GCMFEKGPRQFYDDTCVVPEKFDGDIKQEPG-MYREGPTYQRRG 321 PF00178.13.ls: domain 1 of 1, from 322 to 405: score 211.5, E = 1.8e-60 *->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG +qLWQFL+ LL+d +ns+fI+Wtg +++eFKl+ +peeVAR+WG fj06329 322 SLQLWQFLVALLDD-PSNSHFIAWTG-RGMEFKLI--EPEEVARRWG 364 erKNNkpnMNYdKLSRALRYYYkknIirKvkGkRlvYkFvse<-* ++KN +p+MNYdKLSR+LRYYY+k+I++Kv+G+R+vYkFv++ fj06329 365 IQKN-RPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCD 405 PF00178.13.fs: domain 1 of 1, from 322 to 405: score 209.6, E = 6.7e-60 *->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG +qLWQFL+ LL+d +ns+fI+Wtg +++eFKl+ +peeVAR+WG fj06329 322 SLQLWQFLVALLDD-PSNSHFIAWTG-RGMEFKLI--EPEEVARRWG 364 erKNNkpnMNYdKLSRALRYYYkknIirKvkGkRlvYkFvse<-* ++KN +p+MNYdKLSR+LRYYY+k+I++Kv+G+R+vYkFv++ fj06329 365 IQKN-RPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCD 405 //