hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08341196/chunk_1/iprscan-20080810-08341196.nocrc
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Query sequence: fj06329
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00413                                                 206.8    1.9e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00413    1/1     322   407 ..     1    90 []   206.8  1.9e-57

Alignments of top-scoring domains:
SM00413: domain 1 of 1, from 322 to 407: score 206.8, E = 1.9e-57
                   *->qiqLWqFLleLLldpennsdiIrWtdrsgGeFklvdpeeEVARLWGq
                      ++qLWqFL  LL+dp+n s++I+Wt+r++ eFkl++pee VAR+WG+
     fj06329   322    SLQLWQFLVALLDDPSN-SHFIAWTGRGM-EFKLIEPEE-VARRWGI 365  

                   rKgNkpnMNYeKLSRALRyYYkknIlrKVeGkrlvYkFvkdpl<-*
                   +K N+p+MNY+KLSR+LRyYY+k+I++KV G+r+vYkFv+dp+   
     fj06329   366 QK-NRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPE    407  

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