hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08463454/chunk_1/iprscan-20080810-08463454.nocrc
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Query sequence: fj06364
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00999.11.fs  Sodium/hydrogen exchanger family         210.1    4.8e-60   1
PF00999.11.ls  Sodium/hydrogen exchanger family         -15.8     0.0012   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00999.11.ls    1/1       1   217 [.     1   450 []   -15.8   0.0012
PF00999.11.fs    1/1       7   217 ..   218   450 .]   210.1  4.8e-60

Alignments of top-scoring domains:
PF00999.11.ls: domain 1 of 1, from 1 to 217: score -15.8, E = 0.0012
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                                             +P ++                   
     fj06364     1    -----------------------QPTPP------------------- 5    

                   mflpvepdlslkvealfpadveldlevlaelGlilLlFlaGleldlrelr
                                                                     
     fj06364     - -------------------------------------------------- -    

                   kngksilllallgvllpflliGlllallllglalflgllvlgipllealf
                                   p+ l                              
     fj06364     6 ----------------PASL------------------------------ 9    

                   fGaalsatspvvvlaiLkergrlntrlgtlilgesvlnDavavvlLavll
                                                                     
     fj06364     - -------------------------------------------------- -    

                   alasegggevgglsdlglllliflvvalgglllglvfpwllrlitrftdf
                                          +vv lgg ++glvf +ll+l trft++
     fj06364    10 -----------------------FVVSLGGAAVGLVFAFLLALTTRFTKR 36   

                   rgydgdrelevllvlalallaallaellGlsgilGaFlaGlvlsrlnyaf
                        +r +e+llv++la+ a+l+ae+  ls+il++ ++Gl ++   y++
     fj06364    37 -----VRIIEPLLVFLLAYAAYLTAEMASLSAILAVTMCGLGCK--KYVE 79   

                   aneklseksrt.lepfgymlsglfiplFFvlvGlsldlsvllfdalgprg
                   an  +s+ksrt++++++++l++ +++++F+l+G+s +             
     fj06364    80 AN--ISHKSRTtVKYTMKTLASCAETVIFMLLGISAV------------- 114  

                   tss.hlsllllvllllvaillgKllgvfllarllnkFrrgklslrealiv
                   +ss++ +  +lvl++l++il+ ++lgv+l +++ln+Fr  +l++ +++++
     fj06364   115 DSSkWAWDSGLVLGTLIFILFFRALGVVLQTWVLNQFRLVPLDKIDQVVM 164  

                   gllllqRGavalalaaiglqlgglidreliytllvivvllttlvqGltlk
                   ++++l RGava+al+ +  ++ ++++++++++++++vv++t++vqGlt+k
     fj06364   165 SYGGL-RGAVAFALVILLDRT-KVPAKDYFVATTIVVVFFTVIVQGLTIK 212  

                   pllkk<-*
                   pl+k+   
     fj06364   213 PLVKW    217  

PF00999.11.fs: domain 1 of 1, from 7 to 217: score 210.1, E = 4.8e-60
                   *->liflvvalgglllglvfpwllrlitrftdfrgydgdrelevllvlal
                      ++++vv lgg ++glvf +ll+l trft++     +r +e+llv++l
     fj06364     7    ASLFVVSLGGAAVGLVFAFLLALTTRFTKR-----VRIIEPLLVFLL 48   

                   allaallaellGlsgilGaFlaGlvlsrlnyafaneklseksrt.lepfg
                   a+ a+l+ae+  ls+il++ ++Gl ++   y++an  +s+ksrt++++++
     fj06364    49 AYAAYLTAEMASLSAILAVTMCGLGCK--KYVEAN--ISHKSRTtVKYTM 94   

                   ymlsglfiplFFvlvGlsldlsvllfdalgprgtss.hlsllllvllllv
                   ++l++ +++++F+l+G+s +             +ss++ +  +lvl++l+
     fj06364    95 KTLASCAETVIFMLLGISAV-------------DSSkWAWDSGLVLGTLI 131  

                   aillgKllgvfllarllnkFrrgklslrealivgllllqRGavalalaai
                   +il+ ++lgv+l +++ln+Fr  +l++ +++++++++l RGava+al+ +
     fj06364   132 FILFFRALGVVLQTWVLNQFRLVPLDKIDQVVMSYGGL-RGAVAFALVIL 180  

                   glqlgglidreliytllvivvllttlvqGltlkpllkk<-*
                     ++ ++++++++++++++vv++t++vqGlt+kpl+k+   
     fj06364   181 LDRT-KVPAKDYFVATTIVVVFFTVIVQGLTIKPLVKW    217  

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