hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08463454/chunk_1/iprscan-20080810-08463454.nocrc
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Query sequence: fj06364
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00840 b_cpa1: sodium/hydrogen exchanger 3            281.9      4e-82   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00840   1/1       2   390 ..     1   627 []   281.9    4e-82

Alignments of top-scoring domains:
TIGR00840: domain 1 of 1, from 2 to 390: score 281.9, E = 4e-82
                   *->dyehvqkPyeivLwILLaSLaKigfHLthkvlrvvPESvLLIvyGll
                                                 +                   
     fj06364     2    ---------------------------P------------------- 2    

                   vGgiikaldhHYIidpptLdsslFFlyLLPPIVLdAGYfmpkreFfeNLg
                          ++                    PP                   
     fj06364     3 -------TP--------------------PP------------------- 6    

                   sILlFAvvGTlinAfvlGlsLYgIcliggfgsidIgLLdnLlFGslISAV
                                                                     
     fj06364     - -------------------------------------------------- -    

                   DPVaVLavFeElhVnekLyilIFGESLLNDAVtvVLYntfekFiklSDas
                                                                     
     fj06364     - -------------------------------------------------- -    

                   deavtivdvveGcvsfFvvtlGvGlLvGVvfGflvafitrfTkhirYPvI
                                +s+Fvv+lG G  vG vf+fl+a++trfTk +r  +I
     fj06364     7 -------------ASLFVVSLG-GAAVGLVFAFLLALTTRFTKRVR--II 40   

                   EPlfvllisYlSYLlAEtlhlSGILAlifCGitmkkYveaNiSreSetTi
                   EPl+v+l +Y +YL+AE+ +lS+ILA + CG  +kkYveaNiS++S tT+
     fj06364    41 EPLLVFLLAYAAYLTAEMASLSAILAVTMCGLGCKKYVEANISHKSRTTV 90   

                   kYfmKmlsSlSEtlIFifLGvSlVsenhewnwplaFvvvTlvfCvARWCA
                   kY+mK+l+S +Et IF+ LG+S+V+    w w    v+ Tl f++     
     fj06364    91 KYTMKTLASCAETVIFMLLGISAVDS-SKWAWDSGLVLGTLIFIL----- 134  

                   VFPLSQFVNWiYRvlgvltLswilNeFrSvkvelpfkDQlvifyaGlRGA
                              +R+lgv++++w+lN+Fr   v+l  +DQ+v++y+GlRGA
     fj06364   135 ----------FFRALGVVLQTWVLNQFR--LVPLDKIDQVVMSYGGLRGA 172  

                   VafaLallldekifpaKklFvtTtLvVvffTVIfQGlTIkplvevLkvkk
                   VafaL+ lld +++paK++Fv+Tt+vVvffTVI+QGlTIkplv++Lkvk+
     fj06364   173 VAFALVILLDRTKVPAKDYFVATTIVVVFFTVIVQGLTIKPLVKWLKVKR 222  

                   ddkskekinEelhlrllDHllpgIEDicGqygHdklidKlnkfdkkylkk
                   ++  k+ +n elh   +DH+l+++ED+ G+ g ++++d +  fdkkyl+ 
     fj06364   223 SEHHKPTLNQELHEHTFDHILAAVEDVVGHHGYHYWRDRWEQFDKKYLSQ 272  

                   vlirrnspkssikivavyhklnlkqaIslveeGerrkllsfvgtnStdNi
                    l+rr++  ++++i  vy +ln ++aIs v  G  + +ls+ g+     +
     fj06364   273 LLMRRSAYRIRDQIWDVYYRLNIRDAISFVDQG--GHVLSSTGL-TLPSM 319  

                   vnvDFstPepsnsepivsYFLREnvsAvglpalSsedkeeeiRdtEDmvt
                           + s+ e +v   LRE  s  +l+ +  + ++ + Rd ED v 
     fj06364   320 P------SRNSVAETSVTNLLRESGSGACLDLQVIDTVR-SGRDREDAVM 362  

                   HHiLstnlykprQrlqsrYsrhvLkpvpnE<-*
                   HH+L  +lykpr r +       L   + +   
     fj06364   363 HHLLCGGLYKPRRRDRA--EDRALWHATKD    390  

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