# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj06551.fasta.nr -Q fj06551.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj06551, 174 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822280 sequences Expectation_n fit: rho(ln(x))= 4.8243+/-0.000178; mu= 8.6250+/- 0.010 mean_var=62.4360+/-12.639, 0's: 25 Z-trim: 47 B-trim: 2853 in 1/67 Lambda= 0.162314 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087992|dbj|BAD92443.1| isocitrate dehydrogena ( 174) 1151 277.4 6.4e-73 gi|2393763|gb|AAB70115.1| NAD (H)-specific isocitr ( 296) 1047 253.2 2.1e-65 gi|119593200|gb|EAW72794.1| hCG2004980, isoform CR ( 322) 1047 253.2 2.2e-65 gi|28178838|ref|NP_777358.1| isocitrate dehydrogen ( 380) 1047 253.3 2.5e-65 gi|119593203|gb|EAW72797.1| hCG2004980, isoform CR ( 335) 911 221.4 8.9e-56 gi|61554470|gb|AAX46562.1| isocitrate dehydrogenas ( 335) 911 221.4 8.9e-56 gi|1170481|sp|P41564|IDH3G_MACFA Isocitrate dehydr ( 355) 911 221.4 9.3e-56 gi|119593206|gb|EAW72800.1| hCG2004980, isoform CR ( 371) 911 221.4 9.7e-56 gi|61554381|gb|AAX46548.1| isocitrate dehydrogenas ( 388) 911 221.5 1e-55 gi|119593198|gb|EAW72792.1| hCG2004980, isoform CR ( 389) 911 221.5 1e-55 gi|75057524|sp|Q58CP0|IDH3G_BOVIN Isocitrate dehyd ( 392) 911 221.5 1e-55 gi|1708404|sp|P51553|IDH3G_HUMAN Isocitrate dehydr ( 393) 911 221.5 1e-55 gi|61553545|gb|AAX46424.1| isocitrate dehydrogenas ( 392) 908 220.8 1.6e-55 gi|74008767|ref|XP_867331.1| PREDICTED: similar to ( 335) 907 220.5 1.7e-55 gi|74008769|ref|XP_867343.1| PREDICTED: similar to ( 352) 907 220.5 1.8e-55 gi|74008757|ref|XP_538201.2| PREDICTED: similar to ( 392) 907 220.5 1.9e-55 gi|2393765|gb|AAB70116.1| NAD (H)-specific isocitr ( 210) 902 219.2 2.7e-55 gi|12804901|gb|AAH01902.1| Isocitrate dehydrogenas ( 393) 904 219.8 3.1e-55 gi|119593209|gb|EAW72803.1| hCG2004980, isoform CR ( 347) 902 219.3 4e-55 gi|149029905|gb|EDL85017.1| isocitrate dehydrogena ( 335) 901 219.1 4.5e-55 gi|149029908|gb|EDL85020.1| isocitrate dehydrogena ( 375) 901 219.1 4.9e-55 gi|414185|emb|CAA52225.1| NAD+-isocitrate dehydrog ( 388) 901 219.1 5.1e-55 gi|6166247|sp|P41565|IDH3G_RAT Isocitrate dehydrog ( 393) 901 219.1 5.1e-55 gi|53734531|gb|AAH83688.1| Isocitrate dehydrogenas ( 393) 901 219.1 5.1e-55 gi|117645090|emb|CAL38011.1| hypothetical protein ( 393) 899 218.6 7.1e-55 gi|148697930|gb|EDL29877.1| isocitrate dehydrogena ( 348) 894 217.4 1.5e-54 gi|148697931|gb|EDL29878.1| isocitrate dehydrogena ( 375) 894 217.5 1.5e-54 gi|74185023|dbj|BAE39120.1| unnamed protein produc ( 389) 894 217.5 1.6e-54 gi|2829481|sp|P70404|IDH3G_MOUSE Isocitrate dehydr ( 393) 894 217.5 1.6e-54 gi|149758795|ref|XP_001493461.1| PREDICTED: simila ( 392) 891 216.8 2.6e-54 gi|149637360|ref|XP_001511168.1| PREDICTED: simila ( 376) 883 214.9 9.2e-54 gi|126342124|ref|XP_001378126.1| PREDICTED: simila ( 379) 874 212.8 4e-53 gi|51773592|emb|CAG38689.1| isocitrate dehydrogena ( 352) 845 206.0 4.2e-51 gi|49256472|gb|AAH74219.1| MGC83400 protein [Xenop ( 391) 799 195.2 7.9e-48 gi|60551285|gb|AAH91046.1| Isocitrate dehydrogenas ( 395) 791 193.4 2.9e-47 gi|73988727|ref|XP_542534.2| PREDICTED: similar to ( 389) 769 188.2 1e-45 gi|47228713|emb|CAG07445.1| unnamed protein produc ( 388) 757 185.4 7.2e-45 gi|125852162|ref|XP_699839.2| PREDICTED: hypotheti ( 390) 750 183.8 2.2e-44 gi|74008765|ref|XP_867324.1| PREDICTED: similar to ( 143) 720 176.4 1.3e-42 gi|26345926|dbj|BAC36614.1| unnamed protein produc ( 396) 680 167.4 2e-39 gi|67678056|gb|AAH98006.1| LOC100125384 protein [R ( 395) 668 164.6 1.4e-38 gi|77748056|gb|AAI05849.1| LOC100125384 protein [R ( 399) 668 164.6 1.4e-38 gi|109132781|ref|XP_001087052.1| PREDICTED: simila ( 314) 666 164.0 1.6e-38 gi|115625676|ref|XP_783413.2| PREDICTED: similar t ( 354) 642 158.4 8.5e-37 gi|115625674|ref|XP_001175786.1| PREDICTED: simila ( 362) 642 158.4 8.7e-37 gi|187036139|emb|CAP24745.1| Hypothetical protein ( 373) 538 134.1 1.9e-29 gi|76156143|gb|AAX27374.2| SJCHGC03038 protein [Sc ( 232) 534 133.0 2.5e-29 gi|15150646|gb|AAK85453.1|AC006610_7 Hypothetical ( 373) 535 133.4 3.1e-29 gi|193587197|ref|XP_001949717.1| PREDICTED: simila ( 386) 527 131.5 1.2e-28 gi|22265825|emb|CAA86325.2| C. elegans protein F35 ( 396) 526 131.3 1.4e-28 >>gi|62087992|dbj|BAD92443.1| isocitrate dehydrogenase 3 (174 aa) initn: 1151 init1: 1151 opt: 1151 Z-score: 1464.2 bits: 277.4 E(): 6.4e-73 Smith-Waterman score: 1151; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQ 10 20 30 40 50 60 70 80 90 100 110 120 fj0655 FDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPT 70 80 90 100 110 120 130 140 150 160 170 fj0655 ATLLASCMMLDHLKLHSYATSIRKAVLASMDNENVRFPSHPTLLPRPVSPCSLL :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ATLLASCMMLDHLKLHSYATSIRKAVLASMDNENVRFPSHPTLLPRPVSPCSLL 130 140 150 160 170 >>gi|2393763|gb|AAB70115.1| NAD (H)-specific isocitrate (296 aa) initn: 1047 init1: 1047 opt: 1047 Z-score: 1329.4 bits: 253.2 E(): 2.1e-65 Smith-Waterman score: 1047; 92.941% identity (96.471% similar) in 170 aa overlap (5-174:127-296) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|239 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 100 110 120 130 140 150 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|239 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 160 170 180 190 200 210 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|239 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 220 230 240 250 260 270 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL :::::::::::::::::::: gi|239 VRFPSHPTLLPRPVSPCSLL 280 290 >>gi|119593200|gb|EAW72794.1| hCG2004980, isoform CRA_d (322 aa) initn: 1047 init1: 1047 opt: 1047 Z-score: 1328.9 bits: 253.2 E(): 2.2e-65 Smith-Waterman score: 1047; 92.941% identity (96.471% similar) in 170 aa overlap (5-174:153-322) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|119 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 130 140 150 160 170 180 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 190 200 210 220 230 240 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 250 260 270 280 290 300 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL :::::::::::::::::::: gi|119 VRFPSHPTLLPRPVSPCSLL 310 320 >>gi|28178838|ref|NP_777358.1| isocitrate dehydrogenase (380 aa) initn: 1047 init1: 1047 opt: 1047 Z-score: 1327.9 bits: 253.3 E(): 2.5e-65 Smith-Waterman score: 1047; 92.941% identity (96.471% similar) in 170 aa overlap (5-174:211-380) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|281 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 190 200 210 220 230 240 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 250 260 270 280 290 300 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 310 320 330 340 350 360 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL :::::::::::::::::::: gi|281 VRFPSHPTLLPRPVSPCSLL 370 380 >>gi|119593203|gb|EAW72797.1| hCG2004980, isoform CRA_g (335 aa) initn: 911 init1: 911 opt: 911 Z-score: 1156.5 bits: 221.4 E(): 8.9e-56 Smith-Waterman score: 911; 90.260% identity (95.455% similar) in 154 aa overlap (5-158:153-306) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|119 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 130 140 150 160 170 180 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 190 200 210 220 230 240 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 250 260 270 280 290 300 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL .. : gi|119 MHTPDIGGQGTTSEAIQDVIRHIRVINGRAVEA 310 320 330 >>gi|61554470|gb|AAX46562.1| isocitrate dehydrogenase 3 (335 aa) initn: 911 init1: 911 opt: 911 Z-score: 1156.5 bits: 221.4 E(): 8.9e-56 Smith-Waterman score: 911; 90.260% identity (95.455% similar) in 154 aa overlap (5-158:153-306) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|615 SVAGVVESLKIITKAKSLRIAEYAFQLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 130 140 150 160 170 180 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|615 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 190 200 210 220 230 240 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|615 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 250 260 270 280 290 300 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL .. : gi|615 MHTPDIGGQGTTSEAIQDIIRHIRVINGRAVEA 310 320 330 >>gi|1170481|sp|P41564|IDH3G_MACFA Isocitrate dehydrogen (355 aa) initn: 911 init1: 911 opt: 911 Z-score: 1156.2 bits: 221.4 E(): 9.3e-56 Smith-Waterman score: 911; 90.260% identity (95.455% similar) in 154 aa overlap (5-158:173-326) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|117 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 150 160 170 180 190 200 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 210 220 230 240 250 260 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 270 280 290 300 310 320 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL .. : gi|117 MHTPDIGGQGTTSEAIQDIIRHIRVINGRAVEA 330 340 350 >>gi|119593206|gb|EAW72800.1| hCG2004980, isoform CRA_j (371 aa) initn: 911 init1: 911 opt: 911 Z-score: 1155.9 bits: 221.4 E(): 9.7e-56 Smith-Waterman score: 911; 90.260% identity (95.455% similar) in 154 aa overlap (5-158:189-342) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|119 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 160 170 180 190 200 210 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 220 230 240 250 260 270 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 280 290 300 310 320 330 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL .. : gi|119 MHTPDIGGQGTTSEAIQDVIRHIRVINGRAVEA 340 350 360 370 >>gi|61554381|gb|AAX46548.1| isocitrate dehydrogenase 3 (388 aa) initn: 911 init1: 911 opt: 911 Z-score: 1155.6 bits: 221.5 E(): 1e-55 Smith-Waterman score: 911; 90.260% identity (95.455% similar) in 154 aa overlap (5-158:206-359) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|615 SVAGVVESLKIITKAKSLRIAEYAFQLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 180 190 200 210 220 230 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|615 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 240 250 260 270 280 290 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|615 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 300 310 320 330 340 350 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL .. : gi|615 MHTPDIGGQGTTSEAIQDIIRHIRVINGRAVEA 360 370 380 >>gi|119593198|gb|EAW72792.1| hCG2004980, isoform CRA_b (389 aa) initn: 934 init1: 911 opt: 911 Z-score: 1155.6 bits: 221.5 E(): 1e-55 Smith-Waterman score: 911; 90.260% identity (95.455% similar) in 154 aa overlap (5-158:207-360) 10 20 30 fj0655 TSSLSGRTQRASTAAWSMRKLGDGLFLQCCREVA ::: . ... .. ::::::::::::::: gi|119 SVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVA 180 190 200 210 220 230 40 50 60 70 80 90 fj0655 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 240 250 260 270 280 290 100 110 120 130 140 150 fj0655 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNEN 300 310 320 330 340 350 160 170 fj0655 VRFPSHPTLLPRPVSPCSLL .. : gi|119 MHTPDIGGQGTTSEAIQDVIRHIRVINGRAVEA 360 370 380 174 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 08:50:24 2008 done: Sun Aug 10 08:53:20 2008 Total Scan time: 599.210 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]