hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-08532174/chunk_1/iprscan-20080810-08532174.nocrc
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Query sequence: fj06551
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00180.10.fs Isocitrate/isopropylmalate dehydrogenase       101.8    8.2e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00180.10.fs   1/1      20   148 ..   222   366 ..   101.8  8.2e-31

Alignments of top-scoring domains:
PF00180.10.fs: domain 1 of 1, from 20 to 148: score 101.8, E = 8.2e-31
                   *->ksSrGAFKlWRetveevakkskkskfeYPdveLeHmlvDnaamqLvk
                      k+++G   l+ + + eva+        YP++++e+m+vDn+ mqLv 
     fj06551    20    KLGDG---LFLQCCREVAA-------RYPQITFENMIVDNTTMQLVS 56   

                   nPkqFDyViVTeNlFGDILSDeASmltGSLGmLPSASLgaepDgsgfgly
                   +P+qFD V V++Nl+G I    +++l+G+ G++ +A+ g     +  +++
     fj06551    57 RPQQFD-VMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG-----HVYAVF 100  

                   EPvHGSAPD.....IAGKgkANPiAtILSaAMMLrySlgleeeAdaiEaA
                   E    +A+++++++IA K++ANP+At+L+  MML + l+l   A  i +A
     fj06551   101 E----TATRntgksIANKNIANPTATLLASCMMLDH-LKLHSYATSIRKA 145  

                   Vlk<-*
                   Vl+   
     fj06551   146 VLA    148  

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