hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-09125212/chunk_1/iprscan-20080810-09125212.nocrc
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Query sequence: fj07082
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID)   130.3    4.7e-38   1
PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID)    93.8    4.7e-25   1
PF00017.14.fs SH2 domain                                      71.8    4.2e-24   1
PF00017.14.ls SH2 domain                                      61.7    2.2e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00640.13.fs   1/1       1    97 [.    54   165 .]   130.3  4.7e-38
PF00640.13.ls   1/1       1    97 [.     1   165 []    93.8  4.7e-25
PF00017.14.fs   1/1     267   311 ..     1    53 [.    71.8  4.2e-24
PF00017.14.ls   1/1     267   344 ..     1    82 []    61.7  2.2e-15

Alignments of top-scoring domains:
PF00640.13.fs: domain 1 of 1, from 1 to 97: score 130.3, E = 4.7e-38
                   *->srgerqpgtkidLsistdglklldekteaekevlhdhplrkISFiav
                      +++ +++g++i+L++st+ l+l+ +++   k+++++h++++ISF+++
     fj07082     1    RSNLKFAGMPITLTVSTSSLNLMAADC---KQIIANHHMQSISFASG 44   

                   ggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAediaqa
                    gDpd +  ++ay        +a+++ +++aCH++ec +g  lA+d++++
     fj07082    45 -GDPD-TAEYVAY--------VAKDPVNQRACHILECPEG--LAQDVIST 82   

                   vGqAFevaYqeflra<-*
                   +GqAFe++++++lr    
     fj07082    83 IGQAFELRFKQYLRN    97   

PF00640.13.ls: domain 1 of 1, from 1 to 97: score 93.8, E = 4.7e-25
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                                  ++                  ++k+a          
     fj07082     1    ------------RS------------------NLKFA---------- 7    

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                                g++i+L++st+ l+l+ +++   k+++++h++++ISF
     fj07082     8 -------------GMPITLTVSTSSLNLMAADC---KQIIANHHMQSISF 41   

                   iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi
                   +++ gDpd +  ++ay        +a+++ +++aCH++ec +g  lA+d+
     fj07082    42 ASG-GDPD-TAEYVAY--------VAKDPVNQRACHILECPEG--LAQDV 79   

                   aqavGqAFevaYqeflra<-*
                   ++++GqAFe++++++lr    
     fj07082    80 ISTIGQAFELRFKQYLRN    97   

PF00017.14.fs: domain 1 of 1, from 267 to 311: score 71.8, E = 4.2e-24
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      W+hGk+sR eAE lL+     +G+FLvReS +tpG+Y+L+ +  g  
     fj07082   267    WFHGKLSRREAEALLQL----NGDFLVRESTTTPGQYVLTGLQSG-- 307  

                   gdrVkH<-*
                     + kH   
     fj07082   308 --QPKH    311  

PF00017.14.ls: domain 1 of 1, from 267 to 344: score 61.7, E = 2.2e-15
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      W+hGk+sR eAE lL+     +G+FLvReS +tpG+Y+L+ +  g  
     fj07082   267    WFHGKLSRREAEALLQL----NGDFLVRESTTTPGQYVLTGLQSG-- 307  

                   gdrVkHyrIqsldng.....gyyitggvkFssLpeLvehY<-*
                     + kH     +++g  +   + + gg+k +++p  v+ +   
     fj07082   308 --QPKH-LLLVDPEGvvsvaEVWVRGGKKEGTVPYSVSLF    344  

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