hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-09125212/chunk_1/iprscan-20080810-09125212.nocrc
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Query sequence: fj07082
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00252                                                  65.4    7.2e-15   1
SM00462                                                  32.2    7.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00462    1/1       1   100 [.     1   156 []    32.2  7.2e-05
SM00252    1/1     265   358 ..     1    87 []    65.4  7.2e-15

Alignments of top-scoring domains:
SM00462: domain 1 of 1, from 1 to 100: score 32.2, E = 7.2e-05
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklrsekkkpq
                       +  +f             +                           
     fj07082     1    RSNLKFAG-----------M--------------------------- 9    

                   kvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgdgstdd
                   +++l vS + ++l  ++ kq++a+h++++Isf++ ++          +d+
     fj07082    10 PITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGD----------PDT 49   

                   drvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigqaFqvay
                   + +++y+a+dp +        ++aCH+++c +  a+d++++igqaF++++
     fj07082    50 AEYVAYVAKDPVN--------QRACHILECPEGLAQDVISTIGQAFELRF 91   

                   elklkarse<-*
                   ++ l++ +    
     fj07082    92 KQYLRNPPK    100  

SM00252: domain 1 of 1, from 265 to 358: score 65.4, E = 7.2e-15
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                      epW+HGk+sR eAE+lL+ +    G+FLvR+S ++pg+yvL+    g
     fj07082   265    EPWFHGKLSRREAEALLQLN----GDFLVRESTTTPGQYVLTGLQSG 307  

                   kvkHyrIrrtddgkfylggt...........prrkFpsL.eLvehYqkns
                   + kH ++   + g +++++   ++++++++ p      L+ L+  +++ +
     fj07082   308 QPKHLLLVDPE-GVVSVAEVwvrggkkegtvPYSVSLFLpSLLCRHSRWA 356  

                   lg<-*
                    +   
     fj07082   357 AV    358  

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