hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-09185801/chunk_1/iprscan-20080810-09185801.nocrc
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Query sequence: fj07108
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00060.17.ls Ligand-gated ion channel                       354.5   1.6e-103   1
PF00060.17.fs Ligand-gated ion channel                       352.7   5.5e-103   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00060.17.fs   1/1     207   491 ..     1   304 []   352.7 5.5e-103
PF00060.17.ls   1/1     207   491 ..     1   304 []   354.5 1.6e-103

Alignments of top-scoring domains:
PF00060.17.fs: domain 1 of 1, from 207 to 491: score 352.7, E = 5.5e-103
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      s +vW+++++++l+vs+v ++v+++fsP +++       c  d  + 
     fj07108   207    SADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR------CLAD--GR 245  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                   e   ++ft++ ++W+ +g  +++ ++  +P+++++ i+v+vW+fFa+i++
     fj07108   246 EPGGPSFTIGKAIWLLWGLVFNnSVPVQNPKGTTSKIMVSVWAFFAVIFL 295  

                   sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes
                   +SYTANLAAF++ e  +  +++l+D + q+p+   +++r+g++++ ++e+
     fj07108   296 ASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTER 345  

                   kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE
                   +   +r+++++m++++g+     ++ + +++++ ++++g   +l+AF+++
     fj07108   346 N---IRNNYAEMHAYMGK-----FNQRGVDDALLSLKTG---KLDAFIYD 384  

                   styleyevarnpdCdLttvGev.lfgtkGYGIAlpkgSPlrdklslAILe
                   +++l+y+++r+++C+L+t+G++++f+++GYGIA +k+S ++++++lAIL+
     fj07108   385 AAVLNYMAGRDEGCKLVTIGSGkVFASTGYGIAIQKDSGWKRQVDLAILQ 434  

                   LsEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlv
                   L+ +Ge+e+Le  W+++   C  e+++v+ssqL+++n+aG+F++Lg++++
     fj07108   435 LFGDGEMEELEALWLTGI--CHNEKNEVMSSQLDIDNMAGVFYMLGAAMA 482  

                   LallvalfE<-*
                   L+l+++++E   
     fj07108   483 LSLITFICE    491  

PF00060.17.ls: domain 1 of 1, from 207 to 491: score 354.5, E = 1.6e-103
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      s +vW+++++++l+vs+v ++v+++fsP +++       c  d  + 
     fj07108   207    SADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR------CLAD--GR 245  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                   e   ++ft++ ++W+ +g  +++ ++  +P+++++ i+v+vW+fFa+i++
     fj07108   246 EPGGPSFTIGKAIWLLWGLVFNnSVPVQNPKGTTSKIMVSVWAFFAVIFL 295  

                   sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes
                   +SYTANLAAF++ e  +  +++l+D + q+p+   +++r+g++++ ++e+
     fj07108   296 ASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTER 345  

                   kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE
                   +   +r+++++m++++g+     ++ + +++++ ++++g   +l+AF+++
     fj07108   346 N---IRNNYAEMHAYMGK-----FNQRGVDDALLSLKTG---KLDAFIYD 384  

                   styleyevarnpdCdLttvGev.lfgtkGYGIAlpkgSPlrdklslAILe
                   +++l+y+++r+++C+L+t+G++++f+++GYGIA +k+S ++++++lAIL+
     fj07108   385 AAVLNYMAGRDEGCKLVTIGSGkVFASTGYGIAIQKDSGWKRQVDLAILQ 434  

                   LsEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlv
                   L+ +Ge+e+Le  W+++   C  e+++v+ssqL+++n+aG+F++Lg++++
     fj07108   435 LFGDGEMEELEALWLTGI--CHNEKNEVMSSQLDIDNMAGVFYMLGAAMA 482  

                   LallvalfE<-*
                   L+l+++++E   
     fj07108   483 LSLITFICE    491  

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