hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-09185801/chunk_1/iprscan-20080810-09185801.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj07108
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 242.4    3.8e-68   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1      83   451 ..     1   296 []   242.4  3.8e-68

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 83 to 451: score 242.4, E = 3.8e-68
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      + +V++   +k  v ++k +e     P + +kc++G+CID+l++++k
     fj07108    83    RNTVPC---QKRIVTENKTDE----EPGYIKKCCKGFCIDILKKISK 122  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                    ++FtY+l+lV+ Gk+G+k ++  +WnGmIge++ ++A mAV++LTI+ e
     fj07108   123 SVKFTYDLYLVTNGKHGKKING--TWNGMIGEVVMKRAYMAVGSLTINEE 170  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePfskkLAAfLTverm
                   R++vVDF++PF+e+GIs++v + ++ + s+ +FLePfs      + v  +
     fj07108   171 RSEVVDFSVPFIETGISVMVSRSNG-TVSPSAFLEPFSADVWVMMFVMLL 219  

                   esp...............................................
                     +       +  ++ + ++   +++++++++ + ++      +   +++
     fj07108   220 IVSavavfvfeyfspvgynrcladgrepggpsftigkaiwllwglvfnns 269  

                   .............................................Issve
                    + +++++++++   +           + + +      +++  +++s++ 
     fj07108   270 vpvqnpkgttskimvsvwaffaviflasytanlaafmiqeeyvdqVSGLS 319  

                   DLakrn...pQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrsks
                   D++ +++++ ++++++GTv+++sTe ++++      y+ m++yM      
     fj07108   320 DKKFQRpndFSPPFRFGTVPNGSTERNIRN-----NYAEMHAYM------ 358  

                   psvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGe
                    + + + +++++  ++ +k ++AF++++++l+Y+a+rD+ C+  Lvt+G+
     fj07108   359 GKFNQRGVDDALLSLKTGK-LDAFIYDAAVLNYMAGRDEGCK--LVTIGS 405  

                   ..vfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   ++vf+s+GYGIA +k+S +++ +++AIL+L   Ge+e+L+  W+++   
     fj07108   406 gkVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTG    451  

//