hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-09363751/chunk_1/iprscan-20080810-09363751.nocrc
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Query sequence: fj08016
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00012.10.fs Hsp70 protein                                  179.2    9.1e-51   1
PF00012.10.ls Hsp70 protein                                 -232.1    3.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00012.10.ls   1/1       1   319 []     1   618 []  -232.1  3.5e-07
PF00012.10.fs   1/1       2   190 ..   195   387 ..   179.2  9.1e-51

Alignments of top-scoring domains:
PF00012.10.ls: domain 1 of 1, from 1 to 319: score -232.1, E = 3.5e-07
                   *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV
                                                                     
     fj08016     -    ----------------------------------------------- -    

                   GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd
                                                                     
     fj08016     - -------------------------------------------------- -    

                   awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF
                                                                     
     fj08016     - -------------------------------------------------- -    

                   NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl
                                                                  nIl
     fj08016     1 ----------------------------------------------SNIL 4    

                   VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk
                   Vf LGG +   S++e++ G++ V++Tn D   GG  F + l ++l+ eF+
     fj08016     5 VFKLGGTSLSLSVMEVNSGIYRVLSTNTDDNIGGAHFTETLAQYLASEFQ 54   

                   kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh
                   +  + D++ + rA+ +L+  AE AK  LS     ++n   +++++ G ++
     fj08016    55 RSFKHDVRGNARAMMKLTNSAEVAKHSLST--LGSANCFLDSLYE-G-QD 100  

                   lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR
                   ++ +++RA+FE L+++Lf++++e  +  L + + +++dI++VvL GGs+R
     fj08016   101 FDCNVSRARFELLCSPLFNKCIEAIRGLLDQNGFTADDINKVVLCGGSSR 150  

                   IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsGseeVkDvlLL
                   IP+ q+l+k++F   e+  ++ PDE++ iGAA+ AG+L G    + +l  
     fj08016   151 IPKLQQLIKDLFPAVELLNSIPPDEVIPIGAAIEAGILIG---KENLLVE 197  

                   DVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqVlq
                   D    SL IE +                                      
     fj08016   198 D----SLMIECS-------------------------------------- 205  

                   GERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkDkg
                        a+D                                 + V   D+ 
     fj08016   206 -----ARD---------------------------------ILVKGVDE- 216  

                   tgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNeaEs
                   +g        +s+++L++               +   ++        +E 
     fj08016   217 SGASRFTVLFPSGTPLPA-------------RRQHTLQAPGSISSVCLEL 253  

                   lvystekslkee.klgdkvseadkeklkkveeaiewLkeal.egeddAek
                   +  + ++s kee+k +  v ++      k e  +++  ++l+ + d    
     fj08016   254 YESDGKNSAKEEtKFAQVVLQDLD----KKENGLRDILAVLtMKRD---G 296  

                   eeikakteeLqkvvqkigekmyq<-*
                       + t+     +++i   +     
     fj08016   297 SLHVTCTDQETGKCEAISIEIAS    319  

PF00012.10.fs: domain 1 of 1, from 2 to 190: score 179.2, E = 9.1e-51
                   *->nIlVfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdh
                      nIlVf LGG +   S++e++ G++ V++Tn D   GG  F + l ++
     fj08016     2    NILVFKLGGTSLSLSVMEVNSGIYRVLSTNTDDNIGGAHFTETLAQY 48   

                   lveeFkkkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitad
                   l+ eF++  + D++ + rA+ +L+  AE AK  LS     ++n   ++++
     fj08016    49 LASEFQRSFKHDVRGNARAMMKLTNSAEVAKHSLST--LGSANCFLDSLY 96   

                   adGPkhlsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvL
                   + G ++++ +++RA+FE L+++Lf++++e  +  L + + +++dI++VvL
     fj08016    97 E-G-QDFDCNVSRARFELLCSPLFNKCIEAIRGLLDQNGFTADDINKVVL 144  

                   VGGsTRIPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsG<-*
                    GGs+RIP+ q+l+k++F   e+  ++ PDE++ iGAA+ AG+L G   
     fj08016   145 CGGSSRIPKLQQLIKDLFPAVELLNSIPPDEVIPIGAAIEAGILIG    190  

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