hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-09430517/chunk_1/iprscan-20080810-09430517.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj08031
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    106.8      6e-29   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    104.8    1.2e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     108   179 ..     1    74 []   104.8  1.2e-28
PF00076.12.ls   1/1     108   179 ..     1    74 []   106.8    6e-29

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 108 to 179: score 104.8, E = 1.2e-28
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V +L+ +tte+dL++ Fsk+Gpi ++ iv+D  ++  rs+GfaFV
     fj08031   108    LGVFGLSLYTTERDLREVFSKYGPIADVSIVYD--QQSRRSRGFAFV 152  

                   eFedeedAekAldalnGkelggrelrv<-*
                    Fe+ +dA++A++  nG+el+gr++rv   
     fj08031   153 YFENVDDAKEAKERANGMELDGRRIRV    179  

PF00076.12.ls: domain 1 of 1, from 108 to 179: score 106.8, E = 6e-29
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V +L+ +tte+dL++ Fsk+Gpi ++ iv+D  ++  rs+GfaFV
     fj08031   108    LGVFGLSLYTTERDLREVFSKYGPIADVSIVYD--QQSRRSRGFAFV 152  

                   eFedeedAekAldalnGkelggrelrv<-*
                    Fe+ +dA++A++  nG+el+gr++rv   
     fj08031   153 YFENVDDAKEAKERANGMELDGRRIRV    179  

//