hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-09490779/chunk_1/iprscan-20080810-09490779.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj08602 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 545.0 7.4e-161 18 PF00096.16.fs Zinc finger, C2H2 type 509.7 3e-150 19 PF01352.17.fs KRAB box 90.8 3.5e-25 1 PF01352.17.ls KRAB box 92.8 9.3e-25 1 PF01286.9.fs XPA protein N-terminal 89.1 1.2e-24 14 PF01096.9.fs Transcription factor S-II (TFIIS) 71.4 2e-21 15 PF07754.2.fs Domain of unknown function (DUF1610) 47.8 8.4e-12 12 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 17.6 7.4e-06 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 51 91 .. 1 41 [] 90.8 3.5e-25 PF01352.17.ls 1/1 51 91 .. 1 41 [] 92.8 9.3e-25 PF00096.16.ls 1/18 219 241 .. 1 24 [] 27.8 3.5e-05 PF00096.16.fs 2/19 219 241 .. 1 24 [] 25.8 3.4e-05 PF00096.16.fs 3/19 247 269 .. 1 24 [] 36.3 8.5e-08 PF00096.16.ls 2/18 247 269 .. 1 24 [] 38.3 2.5e-08 PF00096.16.ls 3/18 275 297 .. 1 24 [] 32.0 2e-06 PF00096.16.fs 4/19 275 297 .. 1 24 [] 30.0 3.1e-06 PF00096.16.fs 5/19 303 325 .. 1 24 [] 31.1 1.6e-06 PF00096.16.ls 4/18 303 325 .. 1 24 [] 33.1 9e-07 PF00096.16.ls 5/18 331 353 .. 1 24 [] 29.2 1.4e-05 PF00096.16.fs 6/19 331 353 .. 1 24 [] 27.2 1.6e-05 PF00096.16.fs 7/19 359 381 .. 1 24 [] 31.0 1.8e-06 PF00096.16.ls 6/18 359 381 .. 1 24 [] 33.0 9.8e-07 PF00096.16.ls 7/18 387 409 .. 1 24 [] 19.2 0.014 PF00096.16.ls 8/18 415 437 .. 1 24 [] 31.6 2.6e-06 PF00096.16.fs 9/19 415 437 .. 1 24 [] 29.6 4e-06 PF00096.16.ls 9/18 443 465 .. 1 24 [] 24.0 0.00051 PF00096.16.fs 11/19 471 493 .. 1 24 [] 23.1 0.00017 PF00096.16.ls 10/18 471 493 .. 1 24 [] 25.1 0.00024 PF00096.16.ls 11/18 499 521 .. 1 24 [] 29.1 1.4e-05 PF00096.16.fs 12/19 499 521 .. 1 24 [] 27.1 1.6e-05 PF00096.16.fs 13/19 527 549 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 12/18 527 549 .. 1 24 [] 36.1 1.1e-07 PF00096.16.fs 14/19 555 577 .. 1 24 [] 29.6 4e-06 PF00096.16.ls 13/18 555 577 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 15/19 583 605 .. 1 24 [] 26.8 2e-05 PF00096.16.ls 14/18 583 605 .. 1 24 [] 28.8 1.8e-05 PF00096.16.ls 15/18 611 633 .. 1 24 [] 36.7 7.4e-08 PF00096.16.fs 16/19 611 633 .. 1 24 [] 34.7 2.1e-07 PF00096.16.fs 17/19 639 661 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 16/18 639 661 .. 1 24 [] 29.7 9.3e-06 PF00096.16.fs 18/19 695 717 .. 1 24 [] 30.3 2.6e-06 PF00096.16.ls 17/18 695 717 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 19/19 723 745 .. 1 24 [] 25.7 3.7e-05 PF00096.16.ls 18/18 723 745 .. 1 24 [] 27.7 3.8e-05 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 51 to 91: score 90.8, E = 3.5e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVaV Ft+EE +lLd aQr+LYrdVMlEN++nL+S+g fj08602 51 MTFKDVAVVFTEEELGLLDLAQRKLYRDVMLENFRNLLSVG 91 PF01352.17.ls: domain 1 of 1, from 51 to 91: score 92.8, E = 9.3e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVaV Ft+EE +lLd aQr+LYrdVMlEN++nL+S+g fj08602 51 MTFKDVAVVFTEEELGLLDLAQRKLYRDVMLENFRNLLSVG 91 PF00096.16.ls: domain 1 of 18, from 219 to 241: score 27.8, E = 3.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F+ s L+ H+r+H fj08602 219 HTCD-ECGKNFCYISALRIHQRVH 241 PF00096.16.fs: domain 2 of 19, from 219 to 241: score 25.8, E = 3.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F+ s L+ H+r+H fj08602 219 HTCD-ECGKNFCYISALRIHQRVH 241 PF00096.16.fs: domain 3 of 19, from 247 to 269: score 36.3, E = 8.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s+L++H+r+H fj08602 247 YKCD-VCGKEFSQSSHLQTHQRVH 269 PF00096.16.ls: domain 2 of 18, from 247 to 269: score 38.3, E = 2.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s+L++H+r+H fj08602 247 YKCD-VCGKEFSQSSHLQTHQRVH 269 PF00096.16.ls: domain 3 of 18, from 275 to 297: score 32.0, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk Fsr+s L+ H + H fj08602 275 FKCV-ECGKGFSRRSALNVHHKLH 297 PF00096.16.fs: domain 4 of 19, from 275 to 297: score 30.0, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk Fsr+s L+ H + H fj08602 275 FKCV-ECGKGFSRRSALNVHHKLH 297 PF00096.16.fs: domain 5 of 19, from 303 to 325: score 31.1, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F + s+L+ H+r+H fj08602 303 YNCE-ECGKAFIHDSQLQEHQRIH 325 PF00096.16.ls: domain 4 of 18, from 303 to 325: score 33.1, E = 9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F + s+L+ H+r+H fj08602 303 YNCE-ECGKAFIHDSQLQEHQRIH 325 PF00096.16.ls: domain 5 of 18, from 331 to 353: score 29.2, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ +s L+rH ++H fj08602 331 FKCD-ICGKSFCGRSRLNRHSMVH 353 PF00096.16.fs: domain 6 of 19, from 331 to 353: score 27.2, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ +s L+rH ++H fj08602 331 FKCD-ICGKSFCGRSRLNRHSMVH 353 PF00096.16.fs: domain 7 of 19, from 359 to 381: score 31.0, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+ksF+++s L++H+++H fj08602 359 FRCD-TCDKSFRQRSALNSHRMIH 381 PF00096.16.ls: domain 6 of 18, from 359 to 381: score 33.0, E = 9.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+ksF+++s L++H+++H fj08602 359 FRCD-TCDKSFRQRSALNSHRMIH 381 PF00096.16.ls: domain 7 of 18, from 387 to 409: score 19.2, E = 0.014 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F + +L +H ++H fj08602 387 YKCE-ECGKGFICRRDLYTHHMVH 409 PF00096.16.ls: domain 8 of 18, from 415 to 437: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF+ s L +H+r+H fj08602 415 YNCK-ECGKSFRWASCLLKHQRVH 437 PF00096.16.fs: domain 9 of 19, from 415 to 437: score 29.6, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF+ s L +H+r+H fj08602 415 YNCK-ECGKSFRWASCLLKHQRVH 437 PF00096.16.ls: domain 9 of 18, from 443 to 465: score 24.0, E = 0.00051 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F ++s+ +H+r+H fj08602 443 FKCE-ECGKGFYTNSQCYSHQRSH 465 PF00096.16.fs: domain 11 of 19, from 471 to 493: score 23.1, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk ++r+ +L H+r+H fj08602 471 YKCV-ECGKGYKRRLDLDFHQRVH 493 PF00096.16.ls: domain 10 of 18, from 471 to 493: score 25.1, E = 0.00024 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk ++r+ +L H+r+H fj08602 471 YKCV-ECGKGYKRRLDLDFHQRVH 493 PF00096.16.ls: domain 11 of 18, from 499 to 521: score 29.1, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFsr L +H r H fj08602 499 YNCK-ECGKSFSRAPCLLKHERLH 521 PF00096.16.fs: domain 12 of 19, from 499 to 521: score 27.1, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFsr L +H r H fj08602 499 YNCK-ECGKSFSRAPCLLKHERLH 521 PF00096.16.fs: domain 13 of 19, from 527 to 549: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L++H+r+H fj08602 527 FQCE-ECGKRFTQNSHLHSHQRVH 549 PF00096.16.ls: domain 12 of 18, from 527 to 549: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L++H+r+H fj08602 527 FQCE-ECGKRFTQNSHLHSHQRVH 549 PF00096.16.fs: domain 14 of 19, from 555 to 577: score 29.6, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk +++k nL +H+++H fj08602 555 YKCE-KCGKGYNSKFNLDMHQKVH 577 PF00096.16.ls: domain 13 of 18, from 555 to 577: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk +++k nL +H+++H fj08602 555 YKCE-KCGKGYNSKFNLDMHQKVH 577 PF00096.16.fs: domain 15 of 19, from 583 to 605: score 26.8, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF s L +H+r H fj08602 583 YNCK-ECGKSFGWASCLLKHQRLH 605 PF00096.16.ls: domain 14 of 18, from 583 to 605: score 28.8, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF s L +H+r H fj08602 583 YNCK-ECGKSFGWASCLLKHQRLH 605 PF00096.16.ls: domain 15 of 18, from 611 to 633: score 36.7, E = 7.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++s+L++H+r+H fj08602 611 FKCE-ECGKRFTQNSQLHSHQRVH 633 PF00096.16.fs: domain 16 of 19, from 611 to 633: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++s+L++H+r+H fj08602 611 FKCE-ECGKRFTQNSQLHSHQRVH 633 PF00096.16.fs: domain 17 of 19, from 639 to 661: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs +s+ +H+r+H fj08602 639 YKCD-ECGKGFSWSSTRLTHQRRH 661 PF00096.16.ls: domain 16 of 18, from 639 to 661: score 29.7, E = 9.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs +s+ +H+r+H fj08602 639 YKCD-ECGKGFSWSSTRLTHQRRH 661 PF00096.16.fs: domain 18 of 19, from 695 to 717: score 30.3, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk ++r+ nL +H+r+H fj08602 695 YKCE-DCGKGYNRRLNLDMHQRVH 717 PF00096.16.ls: domain 17 of 18, from 695 to 717: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk ++r+ nL +H+r+H fj08602 695 YKCE-DCGKGYNRRLNLDMHQRVH 717 PF00096.16.fs: domain 19 of 19, from 723 to 745: score 25.7, E = 3.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC +C+ +Fs+ s+L+ H+++H fj08602 723 WKCR-ECDMCFSQASSLRLHQNVH 745 PF00096.16.ls: domain 18 of 18, from 723 to 745: score 27.7, E = 3.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC +C+ +Fs+ s+L+ H+++H fj08602 723 WKCR-ECDMCFSQASSLRLHQNVH 745 //