hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-09490779/chunk_1/iprscan-20080810-09490779.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj08602 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 485.0 3.5e-141 18 SM00349 101.6 9e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 51 110 .. 1 62 [] 101.6 9e-26 SM00355 1/18 219 241 .. 1 23 [] 24.6 0.014 SM00355 2/18 247 269 .. 1 23 [] 31.9 8.6e-05 SM00355 3/18 275 297 .. 1 23 [] 26.9 0.0029 SM00355 4/18 303 325 .. 1 23 [] 28.7 0.0008 SM00355 5/18 331 353 .. 1 23 [] 29.3 0.00054 SM00355 6/18 359 381 .. 1 23 [] 29.2 0.00055 SM00355 7/18 387 409 .. 1 23 [] 22.0 0.082 SM00355 8/18 415 437 .. 1 23 [] 28.8 0.00073 SM00355 9/18 443 465 .. 1 23 [] 22.8 0.046 SM00355 10/18 471 493 .. 1 23 [] 24.2 0.018 SM00355 11/18 499 521 .. 1 23 [] 27.5 0.0018 SM00355 12/18 527 549 .. 1 23 [] 26.6 0.0035 SM00355 13/18 555 577 .. 1 23 [] 28.9 0.0007 SM00355 14/18 583 605 .. 1 23 [] 27.1 0.0024 SM00355 15/18 611 633 .. 1 23 [] 28.4 0.001 SM00355 16/18 639 661 .. 1 23 [] 25.0 0.01 SM00355 17/18 695 717 .. 1 23 [] 28.0 0.0013 SM00355 18/18 723 745 .. 1 23 [] 25.0 0.011 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 51 to 110: score 101.6, E = 9e-26 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DVAV F++EE ++LD aQr LYRdVMlEN++nL S+G+++++ fj08602 51 MTFKDVAVVFTEEELGLLDLAQRKLYRDVMLENFRNLLSVGHQAFH- 96 pdliskLEqgeEpwi<-* ++ + ++e+ w+ fj08602 97 -RDTFHFLREEKIWM 110 SM00355: domain 1 of 18, from 219 to 241: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f+ +aL+ H+rvH fj08602 219 HTCDE-CGKNFCYIsALRIHQRVH 241 SM00355: domain 2 of 18, from 247 to 269: score 31.9, E = 8.6e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L+ H+rvH fj08602 247 YKCDV-CGKEFSQSsHLQTHQRVH 269 SM00355: domain 3 of 18, from 275 to 297: score 26.9, E = 0.0029 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgk fs+++aL+ H + H fj08602 275 FKCVE-CGKGFSRRsALNVHHKLH 297 SM00355: domain 4 of 18, from 303 to 325: score 28.7, E = 0.0008 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f + ++L++H+r+H fj08602 303 YNCEE-CGKAFIHDsQLQEHQRIH 325 SM00355: domain 5 of 18, from 331 to 353: score 29.3, E = 0.00054 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+i Cgksf+ ++ L+rH +vH fj08602 331 FKCDI-CGKSFCGRsRLNRHSMVH 353 SM00355: domain 6 of 18, from 359 to 381: score 29.2, E = 0.00055 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ C+ksf++++aL+ H ++H fj08602 359 FRCDT-CDKSFRQRsALNSHRMIH 381 SM00355: domain 7 of 18, from 387 to 409: score 22.0, E = 0.082 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f +++L H +vH fj08602 387 YKCEE-CGKGFICRrDLYTHHMVH 409 SM00355: domain 8 of 18, from 415 to 437: score 28.8, E = 0.00073 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksf++++ L +H+rvH fj08602 415 YNCKE-CGKSFRWAsCLLKHQRVH 437 SM00355: domain 9 of 18, from 443 to 465: score 22.8, E = 0.046 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f + ++ H+r+H fj08602 443 FKCEE-CGKGFYTNsQCYSHQRSH 465 SM00355: domain 10 of 18, from 471 to 493: score 24.2, E = 0.018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk ++++ +L H+rvH fj08602 471 YKCVE-CGKGYKRRlDLDFHQRVH 493 SM00355: domain 11 of 18, from 499 to 521: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksfs+++ L +H r H fj08602 499 YNCKE-CGKSFSRApCLLKHERLH 521 SM00355: domain 12 of 18, from 527 to 549: score 26.6, E = 0.0035 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk+f++ ++L H+rvH fj08602 527 FQCEE-CGKRFTQNsHLHSHQRVH 549 SM00355: domain 13 of 18, from 555 to 577: score 28.9, E = 0.0007 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk ++sk +L H++vH fj08602 555 YKCEK-CGKGYNSKfNLDMHQKVH 577 SM00355: domain 14 of 18, from 583 to 605: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksf +++ L +H+r H fj08602 583 YNCKE-CGKSFGWAsCLLKHQRLH 605 SM00355: domain 15 of 18, from 611 to 633: score 28.4, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk+f++ ++L H+rvH fj08602 611 FKCEE-CGKRFTQNsQLHSHQRVH 633 SM00355: domain 16 of 18, from 639 to 661: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ + H+r+H fj08602 639 YKCDE-CGKGFSWSsTRLTHQRRH 661 SM00355: domain 17 of 18, from 695 to 717: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgk ++++ +L H+rvH fj08602 695 YKCED-CGKGYNRRlNLDMHQRVH 717 SM00355: domain 18 of 18, from 723 to 745: score 25.0, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + C+++fs++++L+ H+ vH fj08602 723 WKCRE-CDMCFSQAsSLRLHQNVH 745 //