hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-10022255/chunk_1/iprscan-20080810-10022255.nocrc
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Query sequence: fj08835
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    214.5    2.2e-61   2
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    210.6    3.2e-60   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2      47   116 ..     1    74 []   101.8  8.8e-28
PF00076.12.ls   1/2      47   116 ..     1    74 []   103.7    5e-28
PF00076.12.fs   2/2     146   217 ..     1    74 []   108.9  9.1e-30
PF00076.12.ls   2/2     146   217 ..     1    74 []   110.8  3.6e-30

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 47 to 116: score 101.8, E = 8.8e-28
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+VgNL++d+te+ + +lFs++Gp +++k++ D    t  + +++FV
     fj08835    47    LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD----TAGNDPYCFV 89   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF+ ++ A++Al+a+nG++++g+e++v   
     fj08835    90 EFHEHRHAAAALAAMNGRKIMGKEVKV    116  

PF00076.12.ls: domain 1 of 2, from 47 to 116: score 103.7, E = 5e-28
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+VgNL++d+te+ + +lFs++Gp +++k++ D    t  + +++FV
     fj08835    47    LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD----TAGNDPYCFV 89   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF+ ++ A++Al+a+nG++++g+e++v   
     fj08835    90 EFHEHRHAAAALAAMNGRKIMGKEVKV    116  

PF00076.12.fs: domain 2 of 2, from 146 to 217: score 108.9, E = 9.1e-30
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg+L+p++t ed+k++F++fG+i ++++v+D  ++tg+skG++FV
     fj08835   146    VFVGDLSPEITTEDIKAAFAPFGRISDARVVKD--MATGKSKGYGFV 190  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F ++ dAe A++++ G+ lggr +r+   
     fj08835   191 SFFNKWDAENAIQQMGGQWLGGRQIRT    217  

PF00076.12.ls: domain 2 of 2, from 146 to 217: score 110.8, E = 3.6e-30
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg+L+p++t ed+k++F++fG+i ++++v+D  ++tg+skG++FV
     fj08835   146    VFVGDLSPEITTEDIKAAFAPFGRISDARVVKD--MATGKSKGYGFV 190  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F ++ dAe A++++ G+ lggr +r+   
     fj08835   191 SFFNKWDAENAIQQMGGQWLGGRQIRT    217  

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