hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-10022255/chunk_1/iprscan-20080810-10022255.nocrc
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Query sequence: fj08835
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 196.1    3.3e-54   2
SM00361                                                  26.7     0.0031   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00361    1/2      46   117 ..     1    91 []     8.9      3.3
SM00360    1/2      46   117 ..     1   121 []    93.8    2e-23
SM00361    2/2     145   218 ..     1    91 []    17.8     0.44
SM00360    2/2     145   218 ..     1   121 []   102.2  5.9e-26

Alignments of top-scoring domains:
SM00361: domain 1 of 2, from 46 to 117: score 8.9, E = 3.3
                   *->lvlvnglvspeeakdEdferelseeeeyfgevgkinKivinkvtkrl
                       ++v +l s  +  +  +++++s      g  +++ K++++      
     fj08835    46    TLYVGNL-SRDVT-EALILQLFS----QIGPCKNC-KMIMDT----- 80   

                   NayenhkrgsggvYitFFersEDAarAivdlnGryfdGRtlkae<-*
                        +  ++   +++F  +   Aa+A+++ nGr+  G+ +k     
     fj08835    81 ----AGNDPY--CFVEF-HEHRHAAAALAAMNGRKIMGKEVKVN    117  

SM00360: domain 1 of 2, from 46 to 117: score 93.8, E = 2e-23
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      tl+VgNL  + dvte  + +lF              s+ G+ +++++
     fj08835    46    TLYVGNL--SRDVTEALILQLF--------------SQIGPCKNCKM 76   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++d                       T  +  ++FVeF +++ A++A  +
     fj08835    77 IMD-----------------------TAGNDPYCFVEFHEHRHAAAA--L 101  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a+n   G+++  +G++   ++V+   
     fj08835   102 AAMN---GRKI--MGKE---VKVN    117  

SM00361: domain 2 of 2, from 145 to 218: score 17.8, E = 0.44
                   *->lvlvnglvspeeakdEdferelseeeeyfgevgkinKivinkvtkrl
                       v+v +l spe    Ed++  +    + fg + +   +v +  t   
     fj08835   145    HVFVGDL-SPEIT-TEDIKAAF----APFGRISDA-RVVKDMAT--- 181  

                   NayenhkrgsggvYitFFersEDAarAivdlnGryfdGRtlkae<-*
                       + ++g+   +++FF ++ DA+ Ai++  G + +GR+++     
     fj08835   182 ----GKSKGY--GFVSFF-NKWDAENAIQQMGGQWLGGRQIRTN    218  

SM00360: domain 2 of 2, from 145 to 218: score 102.2, E = 5.9e-26
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +fVg L  +p++t ed++ +F              ++fG + ++r+
     fj08835   145    HVFVGDL--SPEITTEDIKAAF--------------APFGRISDARV 175  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+d                       TGkskG++FV F ++ dAe+A  i
     fj08835   176 VKDMA---------------------TGKSKGYGFVSFFNKWDAENA--I 202  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++++   G++l  gGr+   +r +   
     fj08835   203 QQMG---GQWL--GGRQ---IRTN    218  

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