hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09574497/chunk_1/iprscan-20090618-09574497.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj08903 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00003.12.ls 7 transmembrane receptor (metabotropic g 376.6 3.6e-110 1 PF00003.12.fs 7 transmembrane receptor (metabotropic g 374.7 1.3e-109 1 PF01094.18.ls Receptor family ligand binding region 149.6 7.9e-42 1 PF01094.18.fs Receptor family ligand binding region 147.9 2.5e-41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.fs 1/1 85 443 .. 1 421 [] 147.9 2.5e-41 PF01094.18.ls 1/1 85 443 .. 1 421 [] 149.6 7.9e-42 PF00003.12.fs 1/1 494 763 .. 1 279 [] 374.7 1.3e-109 PF00003.12.ls 1/1 494 763 .. 1 279 [] 376.6 3.6e-110 Alignments of top-scoring domains: PF01094.18.fs: domain 1 of 1, from 85 to 443: score 147.9, E = 2.5e-41 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd vlpA++lAie i ++ + ll+++ l+++ +dt+ +d fj08903 85 GVLPAVELAIEQI-RNES-LLRPYFLDLRLYDTE-----------CD 118 .aavaaaacllkskgV..vaiiGPscssvaiavarlanewgiPlisygat +a + a + + g+++ ++G +c+sv++++a ++ w++ ++s++at fj08903 119 nAKGLKAFYDAIKYGPnhLMVFGGVCPSVTSIIAESLQGWNLVQLSFAAT 168 apslsdklknryptfaRtvpsdtkqgaAiadilkhtfgWkrvaviydddd p l d k++yp+f+Rtvpsd+ +++Ai+++lkh ++Wkrv+++ + fj08903 169 TPVLAD--KKKYPYFFRTVPSDNAVNPAILKLLKH-YQWKRVGTL---TQ 212 ydygeggcYFtlealedalkea.ggkvvavAqasdvvvvsevissdddft ++++ ++ ++ +g v++ + is++++f+ fj08903 213 D----------VQRFSEVRNDLtG---VLY-------GEDIEISDTESFS 242 .allkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvw +++ + +k+l++ +r+i+ + +++ ++++a+e+++ + Y+w fj08903 243 nDPCTSVKKLKGNDVRIILGQFDQNMA----AKVFCCAYEENMYGSKYQW 288 iltdlwsdsldsqgdgsdlpwariagadeGlltartf.p.f.q.ldndka i ++ +++w++ ++ + +++ + + + fj08903 289 IIPGWY-----------EPSWWE-----------QVHtEaNsSrCLRKNL 316 reaakgvlgitlkpspefqeflerlkk..................sdtev + a++g +g+ f+ ++ k+ +++++++ +++ ++++s++++ fj08903 317 LAAMEGYIGVD------FEPLSSKQIKtisgktpqqyereynnkrSGVGP 360 nayallaYDAVyllAhAlnealrddpngtaglcnacrdsrvddasnalg. + + ++aYD+++++A l++a ++ +a++ ++ fj08903 361 SKFHGYAYDGIWVIAKTLQRAMET---LHASS----------------Rh 391 g.lnlg.lmkw.dGsqlleylrnkvnFeGltGdvqfddnggrrpdyslvi +++++++++ + G +l+++++ +nF G+tG+v+f +g r+++ fj08903 392 QrIQDFnYTDHtLGRIILNAMNE-TNFFGVTGQVVFR--NGERMGTIKFT 438 lnwdg<-* + +d fj08903 439 QFQDS 443 PF01094.18.ls: domain 1 of 1, from 85 to 443: score 149.6, E = 7.9e-42 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd vlpA++lAie i ++ + ll+++ l+++ +dt+ +d fj08903 85 GVLPAVELAIEQI-RNES-LLRPYFLDLRLYDTE-----------CD 118 .aavaaaacllkskgV..vaiiGPscssvaiavarlanewgiPlisygat +a + a + + g+++ ++G +c+sv++++a ++ w++ ++s++at fj08903 119 nAKGLKAFYDAIKYGPnhLMVFGGVCPSVTSIIAESLQGWNLVQLSFAAT 168 apslsdklknryptfaRtvpsdtkqgaAiadilkhtfgWkrvaviydddd p l d k++yp+f+Rtvpsd+ +++Ai+++lkh ++Wkrv+++ + fj08903 169 TPVLAD--KKKYPYFFRTVPSDNAVNPAILKLLKH-YQWKRVGTL---TQ 212 ydygeggcYFtlealedalkea.ggkvvavAqasdvvvvsevissdddft ++++ ++ ++ +g v++ + is++++f+ fj08903 213 D----------VQRFSEVRNDLtG---VLY-------GEDIEISDTESFS 242 .allkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvw +++ + +k+l++ +r+i+ + +++ ++++a+e+++ + Y+w fj08903 243 nDPCTSVKKLKGNDVRIILGQFDQNMA----AKVFCCAYEENMYGSKYQW 288 iltdlwsdsldsqgdgsdlpwariagadeGlltartf.p.f.q.ldndka i ++ +++w++ ++ + +++ + + + fj08903 289 IIPGWY-----------EPSWWE-----------QVHtEaNsSrCLRKNL 316 reaakgvlgitlkpspefqeflerlkk..................sdtev + a++g +g+ f+ ++ k+ +++++++ +++ ++++s++++ fj08903 317 LAAMEGYIGVD------FEPLSSKQIKtisgktpqqyereynnkrSGVGP 360 nayallaYDAVyllAhAlnealrddpngtaglcnacrdsrvddasnalg. + + ++aYD+++++A l++a ++ +a++ ++ fj08903 361 SKFHGYAYDGIWVIAKTLQRAMET---LHASS----------------Rh 391 g.lnlg.lmkw.dGsqlleylrnkvnFeGltGdvqfddnggrrpdyslvi +++++++++ + G +l+++++ +nF G+tG+v+f +g r+++ fj08903 392 QrIQDFnYTDHtLGRIILNAMNE-TNFFGVTGQVVFR--NGERMGTIKFT 438 lnwdg<-* + +d fj08903 439 QFQDS 443 PF00003.12.fs: domain 1 of 1, from 494 to 763: score 374.7, E = 1.3e-109 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc l+al++lG +++++++l++++k+r+++++K+s++++++l+++g +l+ fj08903 494 LSALTILG-MIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLS 539 flcsflFIgkG.tv.ekPsewsCiLRrilfGlgFtlcySalLaKTirVlr ++++flF+++G++v+ek +e++C++R +++++g+t +++a++aKT+rV++ fj08903 540 YASIFLFGLDGsFVsEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHA 589 aFrkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdk +F+++++++ + i+++++++iv+++ li+++i+++W++v+P+r+++ fj08903 590 IFKNVKMKKKI-----IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTV 634 dihsekekeedeDvsiapiileCnkgsv.vaFvvvLgYlglLavlcfflA + +s++ +++++D+si+p +++C+++++++++++v++Y+glL+++++flA fj08903 635 EKYSMEPDPAGRDISIRPLLEHCENTHMtIWLGIVYAYKGLLMLFGCFLA 684 fltRklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykv ++tR++++ +N++K+I++S+YNv ++Ci+ +A+ ++ +p+ v fj08903 685 WETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPN------V 728 qvaveifsIlaSStglLgciFaPKcYIILfkPekn<-* q++++++ I+++St++L+++F+PK+ ++ ++P+ fj08903 729 QFCIVALVIIFCSTITLCLVFVPKLITLRTNPDAA 763 PF00003.12.ls: domain 1 of 1, from 494 to 763: score 376.6, E = 3.6e-110 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc l+al++lG +++++++l++++k+r+++++K+s++++++l+++g +l+ fj08903 494 LSALTILG-MIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLS 539 flcsflFIgkG.tv.ekPsewsCiLRrilfGlgFtlcySalLaKTirVlr ++++flF+++G++v+ek +e++C++R +++++g+t +++a++aKT+rV++ fj08903 540 YASIFLFGLDGsFVsEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHA 589 aFrkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdk +F+++++++ + i+++++++iv+++ li+++i+++W++v+P+r+++ fj08903 590 IFKNVKMKKKI-----IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTV 634 dihsekekeedeDvsiapiileCnkgsv.vaFvvvLgYlglLavlcfflA + +s++ +++++D+si+p +++C+++++++++++v++Y+glL+++++flA fj08903 635 EKYSMEPDPAGRDISIRPLLEHCENTHMtIWLGIVYAYKGLLMLFGCFLA 684 fltRklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykv ++tR++++ +N++K+I++S+YNv ++Ci+ +A+ ++ +p+ v fj08903 685 WETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPN------V 728 qvaveifsIlaSStglLgciFaPKcYIILfkPekn<-* q++++++ I+++St++L+++F+PK+ ++ ++P+ fj08903 729 QFCIVALVIIFCSTITLCLVFVPKLITLRTNPDAA 763 //