hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-16591770/chunk_1/iprscan-20090630-16591770.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj09513s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 260.7 1.1e-73 6 SM00408 246.0 3.1e-69 6 SM00060 139.7 3e-37 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/6 38 122 .. 1 58 [] 24.4 0.016 SM00408 1/6 44 110 .. 1 56 [] 44.8 1.1e-08 SM00409 2/6 132 220 .. 1 58 [] 37.1 2.3e-06 SM00408 2/6 138 206 .. 1 56 [] 6.9 1.1 SM00409 3/6 237 318 .. 1 58 [] 47.2 2.2e-09 SM00408 3/6 243 307 .. 1 56 [] 63.1 3.6e-14 SM00409 4/6 327 407 .. 1 58 [] 42.6 5.3e-08 SM00408 4/6 333 396 .. 1 56 [] 59.3 5e-13 SM00409 5/6 419 500 .. 1 58 [] 55.3 7.8e-12 SM00408 5/6 425 489 .. 1 56 [] 47.9 1.3e-09 SM00409 6/6 509 598 .. 1 58 [] 54.1 1.8e-11 SM00408 6/6 515 587 .. 1 56 [] 24.0 0.017 SM00060 1/4 601 687 .. 1 69 [] 62.9 4.2e-14 SM00060 2/4 704 790 .. 1 69 [] 22.1 0.075 SM00060 3/4 806 891 .. 1 69 [] 32.3 6.5e-05 SM00060 4/4 906 986 .. 1 69 [] 22.4 0.063 Alignments of top-scoring domains: SM00409: domain 1 of 6, from 38 to 122: score 24.4, E = 0.016 *->pp.vtvkeGesvtLtC.as.....titWy.................. + +++e +tL+C+a ++++++++W ++++ + + ++ + ++ fj09513s1 38 SIfPVGSEDKKITLHCeARgnpspHYRWQlngsdidmsmehryklng 84 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ +I++ + D+ GtY+C at++ g++ s +++L+ fj09513s1 85 gnlVVInPNRNWDT---GTYQCFATnsLGTIVS-REAKLQFA 122 SM00408: domain 1 of 6, from 44 to 110: score 44.8, E = 1.1e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti e+ +tL C+a+g+p p +W +g+ ++ + +++ + ++g+ + i fj09513s1 44 SEDKKITLHCEARGNPSPHYRWQLnGSDIDmsmehryklnGGNLVVI 90 knvsleDsGlYtCvArNsvg<-* + + D G+Y+C+A+Ns g fj09513s1 91 NPNRNWDTGTYQCFATNSLG 110 SM00409: domain 2 of 6, from 132 to 220: score 37.1, E = 2.3e-06 *->pp.vtvkeGesvtLtC.as......titWy................. ++v+v+eG+ v+L C+ +++++ ++ W + ++ ++++ + fj09513s1 132 RStVSVREGQGVVLLCgPPphsgelSYAWIfneypsfveedsrrfvs 178 .....LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* + +++L I++v+p+D G+YtC++t+ ++ + + +t L + fj09513s1 179 qetghLYIsKVEPSDV---GNYTCVVTsmvtNARVLG-SPTPLVLR 220 SM00408: domain 2 of 6, from 138 to 206: score 6.9, E = 1.1 *->leGqsVtLtCpasgdpvp.....nItWlk..gkplp..........s +eGq V+L C+ p p++++ + W++++ + ++++++ ++ fj09513s1 138 REGQGVVLLCG----PPPhsgelSYAWIFneYPSFVeedsrrfvsqE 180 gstLtiknvsleDsGlYtCvArNsvg<-* ++L i+ v+++D G+YtCv+++ v fj09513s1 181 TGHLYISKVEPSDVGNYTCVVTSMVT 206 SM00409: domain 3 of 6, from 237 to 318: score 47.2, E = 2.2e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ + G++v+L+C a +++ ++i W+++++ + +++ + ++ ++ fj09513s1 237 PEtLPAAKGSTVKLECfALgnpipQINWRrsdglpfsskiklrkfsg 283 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I+n + eD+ G Y C a+++ g+ + +Lt + fj09513s1 284 vLEIpNFQQEDA---GSYECIAEnsRGKNVA--RGRLTYY 318 SM00408: domain 3 of 6, from 243 to 307: score 63.1, E = 3.6e-14 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.......sgstLtikn G +V L+C+a g+p p+I W++++g p +++ + ++ ++ L+i n fj09513s1 243 AKGSTVKLECFALGNPIPQINWRRsdGLPFSskiklrkFSGVLEIPN 289 vsleDsGlYtCvArNsvg<-* ++ eD+G Y+C+A+Ns g fj09513s1 290 FQQEDAGSYECIAENSRG 307 SM00409: domain 4 of 6, from 327 to 407: score 42.6, E = 5.3e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v+ + +s+ +C+as++++++++W++++ +++ ++ fj09513s1 327 IKdVEIAVEDSLYWECrASgkpkpSYRWLkngaalvleertqienga 373 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* LtI+n+++ Ds G ++C a++++g ++s +++L+V fj09513s1 374 LTIsNLSVTDS---GMFQCIAEnkHGLVYS--SAELKVV 407 SM00408: domain 4 of 6, from 333 to 396: score 59.3, E = 5e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv +s+ ++C+asg+p p+ +Wlk+g l +++++ ++ Lti+n fj09513s1 333 AVEDSLYWECRASGKPKPSYRWLKnGAALVleertqiENGALTISNL 379 sleDsGlYtCvArNsvg<-* s+ DsG+ +C+A+N++g fj09513s1 380 SVTDSGMFQCIAENKHG 396 SM00409: domain 5 of 6, from 419 to 500: score 55.3, E = 7.8e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. + v v++G+ v+L C+ ++ +W++++ + + + + + +++ fj09513s1 419 KKlVQVQVGSLVSLDCkPRaspraLSSWKkgdvsvqeherisllndg 465 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L I nvt++D+ GtYtC+a++ g+a + +t+L V+ fj09513s1 466 gLKIaNVTKADA---GTYTCMAEnqFGKANG--TTHLVVT 500 SM00408: domain 5 of 6, from 425 to 489: score 47.9, E = 1.3e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn + G V+L C+ +++p + +W+k++ +++++++ + +++ L+i n fj09513s1 425 QVGSLVSLDCKPRASPRALSSWKKgDVSVQeherisllNDGGLKIAN 471 vsleDsGlYtCvArNsvg<-* v+++D+G+YtC A+N g fj09513s1 472 VTKADAGTYTCMAENQFG 489 SM00409: domain 6 of 6, from 509 to 598: score 54.1, E = 1.8e-11 *->pp.vtvkeGesvtLtC.as.......titWy................ p+++ v++Gesv L+C++++++ + +tWy ++ + ++++++ fj09513s1 509 PSnMDVSVGESVILPCqVQhdplldiIFTWYfngaladfkkdgshfe 555 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- + +++++++L I+n+++ +s G Y+C+++++ s+ss + L+V+ fj09513s1 556 kvggsssgdLMIrNIQLKHS---GKYVCMVQtgVDSVSS--AADLIVR 598 * fj09513s1 - - SM00408: domain 6 of 6, from 515 to 587: score 24.0, E = 0.017 *->leGqsVtLtCpasgdp..vpnItWlkgkplp...............s G+sV+L+C + dp + +tW+++ l++ ++++++ ++ +++s fj09513s1 515 SVGESVILPCQVQHDPllDIIFTWYFNGALAdfkkdgshfekvggsS 561 gstLtiknvsleDsGlYtCvArNsvg<-* ++ L i+n++l +sG+Y+C ++ v fj09513s1 562 SGDLMIRNIQLKHSGKYVCMVQTGVD 587 SM00060: domain 1 of 4, from 601 to 687: score 62.9, E = 4.2e-14 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... PgpP+n ++v ++t+t +++lsW++ +++++++++Y+ + fj09513s1 601 PGPPEN---VKVDEITDT------TAQLSWKEGkdnhspVISYSiqa 638 ........................ytltgLkPgaepwteYefrVrAvngn +++ +++++++++++++ ++++ ++t+ L P+ eYefrV+A n+ fj09513s1 639 rtpfsvgwqtvttvpevidgkthtATVVELNPW----VEYEFRVVASNK- 683 daGeg<-* G g fj09513s1 684 -IGGG 687 SM00060: domain 2 of 4, from 704 to 790: score 22.1, E = 0.075 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv pPs + +++ ++++W+p +++ ++++ +++v fj09513s1 704 EVPPSE---VNGGGGSRS------ELVITWDPVpeelqngegfgyVV 741 gYr.....................ytltgLkPgaepwteYefrVrAvngn +r+ +++++ +++++++++++ +++ + +P+ + Ye++V ++n fj09513s1 742 AFRplgvttwiqtvvtspdtpryvFRNESIVPY----SPYEVKVGVYNN- 786 daGeg<-* +Geg fj09513s1 787 -KGEG 790 SM00060: domain 3 of 4, from 806 to 891: score 32.3, E = 6.5e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP.......ivgYr. +Ps +++ + +s+ +++sW++ P + ++++ +gY++ fj09513s1 806 TVAPSQ---VSANSLSSS------EIEVSWNtIPwklsnghLLGYEv 843 .......................ytltgLkPgaepwteYefrVrAvngnd + ++++++++++++ ++ +++++++l+gLk + Y VrA+n+ fj09513s1 844 rywngggkeessskmkvagnetsARLRGLKSN----LAYYTAVRAYNS-- 887 aGeg<-* aG g fj09513s1 888 AGAG 891 SM00060: domain 4 of 4, from 906 to 986: score 22.4, E = 0.063 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P+ P++ +v + t+t v l We + +++++++gY++ fj09513s1 906 PSQPPG---NVVWNATDT------KVLLNWEQVkameneseVTGYKv 943 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++++++++ ++++++ + +l+ k++ Y + V+A ++ +G fj09513s1 944 fyrtssqnnvqvlntnktsaeLVLP-IKED------YIIEVKATTD--GG 984 eg<-* g fj09513s1 985 DG 986 //