hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-10380454/chunk_1/iprscan-20080810-10380454.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj09783 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 368.1 1.3e-107 18 PF00096.16.fs Zinc finger, C2H2 type 337.8 1.7e-98 19 PF02892.5.fs BED zinc finger 29.3 5.9e-08 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02178.9.ls 1/1 104 116 .. 1 13 [] 9.7 0.45 PF00096.16.fs 3/19 304 326 .. 1 24 [] 29.4 4.6e-06 PF00096.16.ls 2/18 304 326 .. 1 24 [] 31.3 3.1e-06 PF00096.16.ls 3/18 332 354 .. 1 24 [] 23.8 0.00055 PF00096.16.ls 6/18 437 459 .. 1 24 [] 18.8 0.018 PF00096.16.ls 8/18 491 514 .. 1 24 [] 24.1 0.00047 PF00096.16.ls 9/18 775 797 .. 1 24 [] 19.0 0.016 PF00096.16.ls 11/18 831 855 .. 1 24 [] 23.7 0.00062 PF00096.16.fs 13/19 863 886 .. 1 24 [] 23.2 0.00016 PF00096.16.ls 12/18 863 886 .. 1 24 [] 25.2 0.00022 PF00096.16.fs 15/19 942 964 .. 1 24 [] 27.2 1.5e-05 PF00096.16.ls 14/18 942 964 .. 1 24 [] 29.2 1.3e-05 PF00096.16.ls 15/18 970 992 .. 1 24 [] 24.4 0.00039 PF00096.16.ls 16/18 999 1021 .. 1 24 [] 23.8 0.00056 PF00096.16.ls 18/18 1074 1097 .. 1 24 [] 19.9 0.0088 Alignments of top-scoring domains: PF02178.9.ls: domain 1 of 1, from 104 to 116: score 9.7, E = 0.45 *->kRkRGRPrKaata<-* kRkRGRP+ + ++ fj09783 104 KRKRGRPKGSTKK 116 PF00096.16.fs: domain 3 of 19, from 304 to 326: score 29.4, E = 4.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+ k++L++Hlr+H fj09783 304 FTCE-YCNKVFKFKHSLQAHLRIH 326 PF00096.16.ls: domain 2 of 18, from 304 to 326: score 31.3, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+ k++L++Hlr+H fj09783 304 FTCE-YCNKVFKFKHSLQAHLRIH 326 PF00096.16.ls: domain 3 of 18, from 332 to 354: score 23.8, E = 0.00055 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +C ++ k+nL+ Hlr+H fj09783 332 YKCP-QCSYASAIKANLNVHLRKH 354 PF00096.16.ls: domain 6 of 18, from 437 to 459: score 18.8, E = 0.018 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ++F++ + rH+ +H fj09783 437 YDCH-ICERKFKNELDRDRHMLVH 459 PF00096.16.ls: domain 8 of 18, from 491 to 514: score 24.1, E = 0.00047 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C +C k+F ++ L++H++ H fj09783 491 YVCA-VCRKKFVSSIRLRTHIKEvH 514 PF00096.16.ls: domain 9 of 18, from 775 to 797: score 19.0, E = 0.016 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk F + ++ +H rtH fj09783 775 LECE-YCGKLFWYQVHFDMHVRTH 797 PF00096.16.ls: domain 11 of 18, from 831 to 855: score 23.7, E = 0.00062 *->ykCpf.dCgksFsrksnLkrHlrtH<-* kCp ++C++s +k+ L++Hl++H fj09783 831 LKCPTdGCDYSTPDKYKLQAHLKVH 855 PF00096.16.fs: domain 13 of 19, from 863 to 886: score 23.2, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+Cp +C ksFs k+H++t+H fj09783 863 YSCP-VCEKSFSEDRLIKSHIKTnH 886 PF00096.16.ls: domain 12 of 18, from 863 to 886: score 25.2, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+Cp +C ksFs k+H++t+H fj09783 863 YSCP-VCEKSFSEDRLIKSHIKTnH 886 PF00096.16.fs: domain 15 of 19, from 942 to 964: score 27.2, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C ++ ++ksnLk+H+++H fj09783 942 FKCS-LCEYATRSKSNLKAHMNRH 964 PF00096.16.ls: domain 14 of 18, from 942 to 964: score 29.2, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C ++ ++ksnLk+H+++H fj09783 942 FKCS-LCEYATRSKSNLKAHMNRH 964 PF00096.16.ls: domain 15 of 18, from 970 to 992: score 24.4, E = 0.00039 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ Cgk+F++k++Lk+H+ H fj09783 970 HLCD-MCGKKFKSKGTLKSHKLLH 992 PF00096.16.ls: domain 16 of 18, from 999 to 1021: score 23.8, E = 0.00056 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+++ +k +L rH+ H fj09783 999 FKCT-VCDYTAAQKPQLLRHMEQH 1021 PF00096.16.ls: domain 18 of 18, from 1074 to 1097: score 19.9, E = 0.0088 *->ykCpfdCgksFsrksnLkrHlrt.H<-* kCp +C ++ +k +++rHl+ +H fj09783 1074 LKCP-VCSFVYGTKWEFNRHLKNkH 1097 //