hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-10380454/chunk_1/iprscan-20080810-10380454.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj09783 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 420.2 1.1e-121 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/19 45 68 .. 1 23 [] 16.6 3.5 SM00355 2/19 149 169 .. 1 23 [] 2.2 1.8e+02 SM00355 3/19 304 326 .. 1 23 [] 27.6 0.0018 SM00355 4/19 332 354 .. 1 23 [] 25.9 0.0056 SM00355 5/19 359 382 .. 1 23 [] 23.6 0.027 SM00355 6/19 387 410 .. 1 23 [] 21.8 0.098 SM00355 7/19 437 459 .. 1 23 [] 24.1 0.019 SM00355 8/19 465 487 .. 1 23 [] 21.1 0.15 SM00355 9/19 491 514 .. 1 23 [] 25.8 0.006 SM00355 10/19 775 797 .. 1 23 [] 21.0 0.16 SM00355 11/19 803 826 .. 1 23 [] 19.7 0.41 SM00355 12/19 831 855 .. 1 23 [] 29.0 0.00066 SM00355 13/19 863 886 .. 1 23 [] 22.9 0.044 SM00355 14/19 913 936 .. 1 23 [] 7.4 46 SM00355 15/19 942 964 .. 1 23 [] 28.7 0.0008 SM00355 16/19 970 992 .. 1 23 [] 25.0 0.01 SM00355 17/19 999 1021 .. 1 23 [] 30.3 0.00027 SM00355 18/19 1027 1050 .. 1 23 [] 18.3 1.1 SM00355 19/19 1074 1097 .. 1 23 [] 29.1 0.00059 Alignments of top-scoring domains: SM00355: domain 1 of 19, from 45 to 68: score 16.6, E = 3.5 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C+ C+ +++++L H+ ++H fj09783 45 FMCKC-CNLFSPNQsELLSHVSeKH 68 SM00355: domain 2 of 19, from 149 to 169: score 2.2, E = 1.8e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C ++fs+ ++L++H+ fj09783 149 LECSK-CCRKFSNTrQLRKHIC-- 169 SM00355: domain 3 of 19, from 304 to 326: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C+k+f+ k++L+ H+r+H fj09783 304 FTCEY-CNKVFKFKhSLQAHLRIH 326 SM00355: domain 4 of 19, from 332 to 354: score 25.9, E = 0.0056 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ C++ k +L+ H+r+H fj09783 332 YKCPQ-CSYASAIKaNLNVHLRKH 354 SM00355: domain 5 of 19, from 359 to 382: score 23.6, E = 0.027 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C++++ sk++Lk H+ +vH fj09783 359 FACDY-CSFTCLSKgHLKVHIErVH 382 SM00355: domain 6 of 19, from 387 to 410: score 21.8, E = 0.098 *->ykCpigCgksfssk.aLkrHmr.vH<-* +C + C+k++s+ ++L++H+r+ H fj09783 387 QHCRF-CKKKYSDVkNLIKHIRdAH 410 SM00355: domain 7 of 19, from 437 to 459: score 24.1, E = 0.019 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+i C ++f+++ + rHm vH fj09783 437 YDCHI-CERKFKNElDRDRHMLVH 459 SM00355: domain 8 of 19, from 465 to 487: score 21.1, E = 0.15 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg + ++aL+ H+r+H fj09783 465 FACEL-CGHGATKYqALELHVRKH 487 SM00355: domain 9 of 19, from 491 to 514: score 25.8, E = 0.006 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C + C k+f s L+ H+++vH fj09783 491 YVCAV-CRKKFVSSiRLRTHIKeVH 514 SM00355: domain 10 of 19, from 775 to 797: score 21.0, E = 0.16 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f + ++ H+r+H fj09783 775 LECEY-CGKLFWYQvHFDMHVRTH 797 SM00355: domain 11 of 19, from 803 to 826: score 19.7, E = 0.41 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C++s +k+ LkrH+ ++H fj09783 803 YYCSQ-CHYSSITKnCLKRHVIqKH 826 SM00355: domain 12 of 19, from 831 to 855: score 29.0, E = 0.00066 *->ykCpi.gCgksfssk.aLkrHmrvH<-* +kCp +gC++s+++k L+ H++vH fj09783 831 LKCPTdGCDYSTPDKyKLQAHLKVH 855 SM00355: domain 13 of 19, from 863 to 886: score 22.9, E = 0.044 *->ykCpigCgksfssk.aLkrHmr.vH<-* y Cp+ C ksfs + k H+++ H fj09783 863 YSCPV-CEKSFSEDrLIKSHIKtNH 886 SM00355: domain 14 of 19, from 913 to 936: score 7.4, E = 46 *->ykCpigCg.ksfssk.aLkrHmrvH<-* kCp+ C+ + ++ ++L+rH+ H fj09783 913 MKCPY-CDfYFMKNGsDLQRHIWAH 936 SM00355: domain 15 of 19, from 942 to 964: score 28.7, E = 0.0008 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C + ++sk++Lk Hm +H fj09783 942 FKCSL-CEYATRSKsNLKAHMNRH 964 SM00355: domain 16 of 19, from 970 to 992: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk+f+sk+ Lk H H fj09783 970 HLCDM-CGKKFKSKgTLKSHKLLH 992 SM00355: domain 17 of 19, from 999 to 1021: score 30.3, E = 0.00027 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+++ +k++L rHm +H fj09783 999 FKCTV-CDYTAAQKpQLLRHMEQH 1021 SM00355: domain 18 of 19, from 1027 to 1050: score 18.3, E = 1.1 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++s++ ++LkrH+ ++H fj09783 1027 FRCAH-CHYSCNISgSLKRHYNrKH 1050 SM00355: domain 19 of 19, from 1074 to 1097: score 29.1, E = 0.00059 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kCp+ C++++ +k +++rH++++H fj09783 1074 LKCPV-CSFVYGTKwEFNRHLKnKH 1097 //