hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15184299/chunk_1/iprscan-20090416-15184299.nocrc
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Query sequence: fj09834
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08416.3.ls Phosphotyrosine-binding domain                 272.2    9.4e-79   1
PF08416.3.fs Phosphotyrosine-binding domain                 270.4    3.4e-78   1
PF00018.18.fs SH3 domain                                      50.2      6e-13   1
PF00018.18.ls SH3 domain                                      52.1    1.7e-12   1
PF07653.7.fs Variant SH3 domain                              36.1    9.6e-10   1
PF07653.7.ls Variant SH3 domain                              37.8    3.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08416.3.fs   1/1     138   268 ..     1   145 []   270.4  3.4e-78
PF08416.3.ls   1/1     138   268 ..     1   145 []   272.2  9.4e-79
PF00018.18.fs   1/1     608   662 ..     1    59 []    50.2    6e-13
PF00018.18.ls   1/1     608   662 ..     1    59 []    52.1  1.7e-12
PF07653.7.fs   1/1     609   662 ..     1    69 []    36.1  9.6e-10
PF07653.7.ls   1/1     609   662 ..     1    69 []    37.8  3.4e-08

Alignments of top-scoring domains:
PF08416.3.fs: domain 1 of 1, from 138 to 268: score 270.4, E = 3.4e-78
                   *->QyrVeHLfTfdldsltGvqaVeDaiakLqlLdakGrvwpQdvlLqVs
                      QyrVeHL+Tf+ld+++++ +V+D+i+kL+lLdakG+vw+Qd++LqV+
     fj09834   138    QYRVEHLTTFVLDRKDAMITVDDGIRKLKLLDAKGKVWTQDMILQVD 184  

                   dqgitLtDnerKeeLREhypLnsirfcqavlndrrynStsdgddiiAssr
                   d++++L+D e+K+eL E++pLn+i++cqav+++++y+S            
     fj09834   185 DRAVSLIDLESKNEL-ENFPLNTIQHCQAVMHSCSYDS------------ 221  

                   lLafVaqepgqskpnvCHlFqCdEleAeqpasdIesalskvllgkkkr<-
                   +La+V++ep+q kp++ HlFqCdE++A+++ +dIesa+s++++gk+kr  
     fj09834   222 VLALVCKEPTQNKPDL-HLFQCDEVKANLISEDIESAISDSKGGKQKR   268  

                   *
                    
     fj09834     -   -    

PF08416.3.ls: domain 1 of 1, from 138 to 268: score 272.2, E = 9.4e-79
                   *->QyrVeHLfTfdldsltGvqaVeDaiakLqlLdakGrvwpQdvlLqVs
                      QyrVeHL+Tf+ld+++++ +V+D+i+kL+lLdakG+vw+Qd++LqV+
     fj09834   138    QYRVEHLTTFVLDRKDAMITVDDGIRKLKLLDAKGKVWTQDMILQVD 184  

                   dqgitLtDnerKeeLREhypLnsirfcqavlndrrynStsdgddiiAssr
                   d++++L+D e+K+eL E++pLn+i++cqav+++++y+S            
     fj09834   185 DRAVSLIDLESKNEL-ENFPLNTIQHCQAVMHSCSYDS------------ 221  

                   lLafVaqepgqskpnvCHlFqCdEleAeqpasdIesalskvllgkkkr<-
                   +La+V++ep+q kp++ HlFqCdE++A+++ +dIesa+s++++gk+kr  
     fj09834   222 VLALVCKEPTQNKPDL-HLFQCDEVKANLISEDIESAISDSKGGKQKR   268  

                   *
                    
     fj09834     -   -    

PF00018.18.fs: domain 1 of 1, from 608 to 662: score 50.2, E = 6e-13
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      k+++ +YD++ar+ +ELs  k D++++l++ +   WWk+r+ +  G 
     fj09834   608    KYAKSKYDFVARNNSELSVLKDDILEILDDRKQ--WWKVRNAS--GD 650  

                   eGliPsNYVepv<-*
                    G++P N ++ v   
     fj09834   651 SGFVPNNILDIV    662  

PF00018.18.ls: domain 1 of 1, from 608 to 662: score 52.1, E = 1.7e-12
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      k+++ +YD++ar+ +ELs  k D++++l++ +   WWk+r+ +  G 
     fj09834   608    KYAKSKYDFVARNNSELSVLKDDILEILDDRKQ--WWKVRNAS--GD 650  

                   eGliPsNYVepv<-*
                    G++P N ++ v   
     fj09834   651 SGFVPNNILDIV    662  

PF07653.7.fs: domain 1 of 1, from 609 to 662: score 36.1, E = 9.6e-10
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      y++   d+va ++++e      Ls+ k+d+++++      d+  ww+
     fj09834   609    YAKSKYDFVA-RNNSE------LSVLKDDILEIL-----DDRKQWWK 643  

                   geslggGrrrRGlvPssaveel<-*
                   +++ + G    G+vP++++ ++   
     fj09834   644 VRN-ASGDS--GFVPNNILDIV    662  

PF07653.7.ls: domain 1 of 1, from 609 to 662: score 37.8, E = 3.4e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      y++   d+va ++++e      Ls+ k+d+++++      d+  ww+
     fj09834   609    YAKSKYDFVA-RNNSE------LSVLKDDILEIL-----DDRKQWWK 643  

                   geslggGrrrRGlvPssaveel<-*
                   +++ + G    G+vP++++ ++   
     fj09834   644 VRN-ASGDS--GFVPNNILDIV    662  

//