hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15184299/chunk_1/iprscan-20090416-15184299.nocrc
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Query sequence: fj09834
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                 119.7    3.3e-31   1
SM00326                                                  61.0    1.5e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00462    1/1     134   271 ..     1   156 []   119.7  3.3e-31
SM00326    1/1     608   663 ..     1    58 []    61.0  1.5e-13

Alignments of top-scoring domains:
SM00462: domain 1 of 1, from 134 to 271: score 119.7, E = 3.3e-31
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr....sek
                      s+  +++V++L ++ +++++        +  +++ irkl+  + ++k
     fj09834   134    SDISQYRVEHLTTFVLDRKD-------AMITVDDGIRKLKlldaKGK 173  

                   kkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgdg
                    ++q++il+v +++v+lid ++k++l ++pl++I +c a +        +
     fj09834   174 VWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVM--------H 215  

                   stdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigqaF
                   s+++d+v+++++++p++        ++ +H+F+c++++a+ i+++i  a+
     fj09834   216 SCSYDSVLALVCKEPTQN-------KPDLHLFQCDEVKANLISEDIESAI 258  

                   qvayelklkarse<-*
                   +     k+k+r++   
     fj09834   259 SDSKGGKQKRRPD    271  

SM00326: domain 1 of 1, from 608 to 663: score 61.0, E = 1.5e-13
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      +y++ +YD+ a+n  ELs+ k+Di+++l++    Ww++++  +G  G
     fj09834   608    KYAKSKYDFVARNNSELSVLKDDILEILDD-RKQWWKVRNA-SGDSG 652  

                   lfPsnYVeeie<-*
                   ++P n + +++   
     fj09834   653 FVPNNILDIVR    663  

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