hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-10441955/chunk_1/iprscan-20080810-10441955.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj09987 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02210.14.fs Laminin G domain 383.9 2.2e-112 6 PF02210.14.ls Laminin G domain 377.9 1.5e-110 5 PF06008.4.fs Laminin Domain I 244.4 2.2e-70 1 PF06009.3.ls Laminin Domain II 179.6 7.3e-51 1 PF06009.3.fs Laminin Domain II 177.7 2.7e-50 1 PF00054.13.fs Laminin G domain 136.6 7.6e-39 5 PF06008.4.ls Laminin Domain I 134.5 2.7e-37 1 PF00054.13.ls Laminin G domain 128.5 1.7e-35 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06008.4.fs 1/1 1 180 [. 88 274 .] 244.4 2.2e-70 PF06008.4.ls 1/1 1 180 [. 1 274 [] 134.5 2.7e-37 PF06009.3.ls 1/1 363 491 .. 1 144 [] 179.6 7.3e-51 PF06009.3.fs 1/1 363 491 .. 1 144 [] 177.7 2.7e-50 PF02210.14.ls 2/5 701 821 .. 1 141 [] 69.6 9.3e-18 PF00054.13.fs 2/5 701 817 .. 1 152 [. 19.0 4.2e-05 PF02210.14.fs 3/6 701 821 .. 1 141 [] 67.8 2e-19 PF02210.14.ls 3/5 872 979 .. 1 141 [] 61.8 2.1e-15 PF02210.14.fs 4/6 872 979 .. 1 141 [] 60.1 3.5e-17 PF02210.14.fs 5/6 1091 1211 .. 1 141 [] 115.5 2.3e-33 PF00054.13.ls 2/3 1091 1214 .. 1 159 [] 58.4 2.2e-14 PF02210.14.ls 4/5 1091 1211 .. 1 141 [] 117.4 3.9e-32 PF00054.13.fs 4/5 1091 1214 .. 1 159 [] 56.6 6.8e-16 PF00054.13.fs 5/5 1261 1389 .. 1 159 [] 50.3 4.3e-14 PF02210.14.ls 5/5 1261 1386 .. 1 141 [] 120.5 4.4e-33 PF00054.13.ls 3/3 1261 1389 .. 1 159 [] 52.1 1.7e-12 PF02210.14.fs 6/6 1261 1386 .. 1 141 [] 118.7 2.8e-34 Alignments of top-scoring domains: PF06008.4.fs: domain 1 of 1, from 1 to 180: score 244.4, E = 2.2e-70 *->tlghAkqLaeaikklrdnikeileklaglgeTlanaealpssaLsrm ++++Ak+L+++ik++++n++++l++++g+++ +++++ps+++sr+ fj09987 1 ATQSAKELDVKIKNVIRNVHILLKQISGTDG---EGNNVPSGDFSRE 44 laeAqrmLeeiReRddmfqkqleeAeaelkaAeeLLsrvqtwfqklqeen +aeAqrm++e+R+R + f+k+l+eAea+++++++LL+r++tw++++q en fj09987 45 WAEAQRMMRELRNR-N-FGKHLREAEADKRESQLLLNRIRTWQKTHQGEN 92 egLfealkddLneyeakLsDlrelldeAqakDtrdAerlnlanqkrlrei +gL+++++d+LneyeakLsDlr++l+eA+a+ +++A++ln++n+++l++i fj09987 93 NGLANSIRDSLNEYEAKLSDLRARLQEAAAQ-AKQANGLNQENERALGAI 141 eekkeeveelknqieetLatgrdsLdqanlElLqemdqal<-* +++++e+++l+++++++L+t+++sL+q+n+ +Lq+m++++ fj09987 142 QRQVKEINSLQSDFTKYLTTADSSLLQTNI-ALQLMEKSQ 180 PF06008.4.ls: domain 1 of 1, from 1 to 180: score 134.5, E = 2.7e-37 *->qLdevGDAllslNslTGalpapykilanienltqqLserlskisatk fj09987 1 A---------------------------------------------- 1 rqledlEkalskLaqdaenLqkkankalakaqkvnaeiertlghAkqLae +++Ak+L++ fj09987 2 -----------------------------------------TQSAKELDV 10 aikklrdnikeileklaglgeTlanaealpssaLsrmlaeAqrmLeeiRe +ik++++n++++l++++g+++ +++++ps+++sr++aeAqrm++e+R+ fj09987 11 KIKNVIRNVHILLKQISGTDG---EGNNVPSGDFSREWAEAQRMMRELRN 57 RddmfqkqleeAeaelkaAeeLLsrvqtwfqklqeenegLfealkddLne R + f+k+l+eAea+++++++LL+r++tw++++q en+gL+++++d+Lne fj09987 58 R-N-FGKHLREAEADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNE 105 yeakLsDlrelldeAqakDtrdAerlnlanqkrlreieekkeeveelknq yeakLsDlr++l+eA+a+ +++A++ln++n+++l++i+++++e+++l+++ fj09987 106 YEAKLSDLRARLQEAAAQ-AKQANGLNQENERALGAIQRQVKEINSLQSD 154 ieetLatgrdsLdqanlElLqemdqal<-* ++++L+t+++sL+q+n+ +Lq+m++++ fj09987 155 FTKYLTTADSSLLQTNI-ALQLMEKSQ 180 PF06009.3.ls: domain 1 of 1, from 363 to 491: score 179.6, E = 7.3e-51 *->sKemAdeAnetaaaVlkelepiqtnvsnikaslsklngdleetnklv +K+m+++An+++ +Vl++l piqt+v++ik+ +++++++ fj09987 363 AKSMVRKANDITDEVLDGLNPIQTDVERIKDTYGRTQNE-------- 401 sdpsankaiddArrsvrklnklapyLldkLkpleklsvasqsrtdslsrn ++ ka+ dA +sv kl+ ++p+L k+++++++ ++++ +s+n fj09987 402 ---DFKKALTDADNSVNKLTNKLPDLWRKIESINQQLLPLGN----ISDN 444 isriKelIaqARkaAnkIkVsvnfdGdsglelrppisltdlaaltsl<-* +ri+elI qAR+aA+k++V+++f+G+sg+e+r+p++l+dl+++tsl fj09987 445 MDRIRELIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSL 491 PF06009.3.fs: domain 1 of 1, from 363 to 491: score 177.7, E = 2.7e-50 *->sKemAdeAnetaaaVlkelepiqtnvsnikaslsklngdleetnklv +K+m+++An+++ +Vl++l piqt+v++ik+ +++++++ fj09987 363 AKSMVRKANDITDEVLDGLNPIQTDVERIKDTYGRTQNE-------- 401 sdpsankaiddArrsvrklnklapyLldkLkpleklsvasqsrtdslsrn ++ ka+ dA +sv kl+ ++p+L k+++++++ ++++ +s+n fj09987 402 ---DFKKALTDADNSVNKLTNKLPDLWRKIESINQQLLPLGN----ISDN 444 isriKelIaqARkaAnkIkVsvnfdGdsglelrppisltdlaaltsl<-* +ri+elI qAR+aA+k++V+++f+G+sg+e+r+p++l+dl+++tsl fj09987 445 MDRIRELIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSL 491 PF02210.14.ls: domain 2 of 5, from 701 to 821: score 69.6, E = 9.3e-18 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl + T t + GlL++a++++ f++L ++dG+l +ry+l fj09987 701 IQT-TVDRGLLFFAENGdR-----------FISLNIEDGKLMVRYKL 735 Gsgg.vlltsg.plnDGqWHtVsverngrs..vtLsVDgg.vv.g.spgs +s+ + g+ +n+G+ H++++ + + ++++++ VD +++ ++ + fj09987 736 NSELpKERGVGdAINNGRDHSIQIKIGKLQkrMWINVDVQnTIiDgEVFD 785 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri ++t +ylGG+p + + + + ++ F+GC++n++ fj09987 786 FST--------YYLGGIPIAIRERFNIS---------TpAFRGCMKNLKK 818 nge<-* + fj09987 819 TSG 821 PF00054.13.fs: domain 2 of 5, from 701 to 817: score 19.0, E = 4.2e-05 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl + Tt GlL+ +++ +r F++l + dG+l v+y+l fj09987 701 IQTTVDRGLLF---FAENGDR---------FISLNIEDGKLMVRYKL 735 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVd.gearskktLg s r+ +n+G+ Hs+++++ + + ++++ + ++ fj09987 736 NSE---LPKERGVGDAINNGRDHSIQIKIGKLQKRMWINvDVQN------ 776 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaisps.fk + +++++ d+ + y+GG+P + ++r +is++ f+ fj09987 777 -------TIIDGEV----FDFST-YYLGGIP----IAIRERFNISTPaFR 810 GCirdvi<-* GC+++++ fj09987 811 GCMKNLK 817 PF02210.14.fs: domain 3 of 6, from 701 to 821: score 67.8, E = 2e-19 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl + T t + GlL++a++++ f++L ++dG+l +ry+l fj09987 701 IQT-TVDRGLLFFAENGdR-----------FISLNIEDGKLMVRYKL 735 Gsgg.vlltsg.plnDGqWHtVsverngrs..vtLsVDgg.vv.g.spgs +s+ + g+ +n+G+ H++++ + + ++++++ VD +++ ++ + fj09987 736 NSELpKERGVGdAINNGRDHSIQIKIGKLQkrMWINVDVQnTIiDgEVFD 785 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri ++t +ylGG+p + + + + ++ F+GC++n++ fj09987 786 FST--------YYLGGIPIAIRERFNIS---------TpAFRGCMKNLKK 818 nge<-* + fj09987 819 TSG 821 PF02210.14.ls: domain 3 of 5, from 872 to 979: score 61.8, E = 2.1e-15 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F T qp+G+Ll + + l++ L+dG+++l+ + fj09987 872 FQT-FQPSGILLDHQTWtR-----------NLQVTLEDGYIELSTSD 906 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd g+ ++ s++++ DG H Vsv+ +++ ++L +D++ +++++ + fj09987 907 S--GgPIFKSPqTYMDGLLHYVSVISDNSGLRLLIDDQlLRnSkRLKH-- 952 tlslnlngplylGGlpesskssllrliaaqnlvtvsgFvGCirnvringe + ++l lGG +F+GCi+nv++ fj09987 953 --ISSSRQSLRLGGS---------------------NFEGCISNVFVQRL 979 <-* fj09987 - - PF02210.14.fs: domain 4 of 6, from 872 to 979: score 60.1, E = 3.5e-17 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F T qp+G+Ll + + l++ L+dG+++l+ + fj09987 872 FQT-FQPSGILLDHQTWtR-----------NLQVTLEDGYIELSTSD 906 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd g+ ++ s++++ DG H Vsv+ +++ ++L +D++ +++++ + fj09987 907 S--GgPIFKSPqTYMDGLLHYVSVISDNSGLRLLIDDQlLRnSkRLKH-- 952 tlslnlngplylGGlpesskssllrliaaqnlvtvsgFvGCirnvringe + ++l lGG +F+GCi+nv++ fj09987 953 --ISSSRQSLRLGGS---------------------NFEGCISNVFVQRL 979 <-* fj09987 - - PF02210.14.fs: domain 5 of 6, from 1091 to 1211: score 115.5, E = 2.3e-33 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl T t++ Gl++++g k++ f+aL+L Grlv+ + fj09987 1091 MQT-TSSRGLVFHTGTKnS-----------FMALYLSKGRLVFALGT 1125 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd g ++ + s+++ nDG+WHtV++ +g +++L+VDg ++++g++pg+s fj09987 1126 D-GKkLRIKSKeKCNDGKWHTVVFGHDGEKGRLVVDGLrAReGsLPGNS- 1173 tlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvring + + p+ylG p + +sl+ +++FvGC++n+++++ fj09987 1174 --TISIRAPVYLGSPPSGKPKSLP-----------TnSFVGCLKNFQLDS 1210 e<-* + fj09987 1211 K 1211 PF00054.13.ls: domain 2 of 3, from 1091 to 1214: score 58.4, E = 2.2e-14 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl Tt++ Gl++ +Gt++ +al L +Grl + + + fj09987 1091 MQTTSSRGLVF--HTGTKNSF----------MALYLSKGRLVFALGT 1125 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG + + + s++k +nDGkWH+v+ g +g L Vdg ++ fj09987 1126 DGK---KLRIKSKEK-CNDGKWHTVVFGHDGEKGRLVVDGLRA------- 1164 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC +e l++++ t++ + ++y+G P +++++ + sf+GC fj09987 1165 ----REGSLPGNS---TISIRAPVYLGSPP---SGKPKSL--PTNSFVGC 1202 irdviingkpld<-* +++ +++kpl fj09987 1203 LKNFQLDSKPLY 1214 PF02210.14.ls: domain 4 of 5, from 1091 to 1211: score 117.4, E = 3.9e-32 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl T t++ Gl++++g k++ f+aL+L Grlv+ + fj09987 1091 MQT-TSSRGLVFHTGTKnS-----------FMALYLSKGRLVFALGT 1125 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd g ++ + s+++ nDG+WHtV++ +g +++L+VDg ++++g++pg+s fj09987 1126 D-GKkLRIKSKeKCNDGKWHTVVFGHDGEKGRLVVDGLrAReGsLPGNS- 1173 tlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvring + + p+ylG p + +sl+ +++FvGC++n+++++ fj09987 1174 --TISIRAPVYLGSPPSGKPKSLP-----------TnSFVGCLKNFQLDS 1210 e<-* + fj09987 1211 K 1211 PF00054.13.fs: domain 4 of 5, from 1091 to 1214: score 56.6, E = 6.8e-16 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl Tt++ Gl++ +Gt++ +al L +Grl + + + fj09987 1091 MQTTSSRGLVF--HTGTKNSF----------MALYLSKGRLVFALGT 1125 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG + + + s++k +nDGkWH+v+ g +g L Vdg ++ fj09987 1126 DGK---KLRIKSKEK-CNDGKWHTVVFGHDGEKGRLVVDGLRA------- 1164 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC +e l++++ t++ + ++y+G P +++++ + sf+GC fj09987 1165 ----REGSLPGNS---TISIRAPVYLGSPP---SGKPKSL--PTNSFVGC 1202 irdviingkpld<-* +++ +++kpl fj09987 1203 LKNFQLDSKPLY 1214 PF00054.13.fs: domain 5 of 5, from 1261 to 1389: score 50.3, E = 4.3e-14 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl +R ++ +G+L G+q+++ l + L G++ s+d fj09987 1261 IRPRSLTGILI--HIGSQPGK---------HLCVYLEAGKVTASMDS 1296 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVd.gearskktLg G+g + ++v++++ l+DG+WHsv +++ ++++ L +d++ + fj09987 1297 GAG-GTSTSVTPKQS-LCDGQWHSVAVTIKQHILHLELDtDSSY------ 1338 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG g p ++ + + ++L +GG+P +r ++ +sf G fj09987 1339 ---TAGQIPFPPAS------TQEPLHLGGAP---ANLTTLRIPVWKSFFG 1376 Cirdviingkpld<-* C+r++++n+ p+ fj09987 1377 CLRNIHVNHIPVP 1389 PF02210.14.ls: domain 5 of 5, from 1261 to 1386: score 120.5, E = 4.4e-33 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl +R+ ++ +G+L ++g+++g +l+++L+ G++ ++d fj09987 1261 IRP-RSLTGILIHIGSQpG---------K-HLCVYLEAGKVTASMDS 1296 G.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgss G +g+++++t++++l+DGqWH+V+v+++++ ++L++D ++ ++++ + + fj09987 1297 GaGGTsTSVTPKqSLCDGQWHSVAVTIKQHILHLELDTDsSYtAgQIPFP 1346 dtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin +++pl+lGG+p ++ + ++++ ++F GC+rn+ +n fj09987 1347 ---PASTQEPLHLGGAPANLTTLRIPV---------WkSFFGCLRNIHVN 1384 ge<-* ++ fj09987 1385 HI 1386 PF00054.13.ls: domain 3 of 3, from 1261 to 1389: score 52.1, E = 1.7e-12 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl +R ++ +G+L G+q+++ l + L G++ s+d fj09987 1261 IRPRSLTGILI--HIGSQPGK---------HLCVYLEAGKVTASMDS 1296 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVd.gearskktLg G+g + ++v++++ l+DG+WHsv +++ ++++ L +d++ + fj09987 1297 GAG-GTSTSVTPKQS-LCDGQWHSVAVTIKQHILHLELDtDSSY------ 1338 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG g p ++ + + ++L +GG+P +r ++ +sf G fj09987 1339 ---TAGQIPFPPAS------TQEPLHLGGAP---ANLTTLRIPVWKSFFG 1376 Cirdviingkpld<-* C+r++++n+ p+ fj09987 1377 CLRNIHVNHIPVP 1389 PF02210.14.fs: domain 6 of 6, from 1261 to 1386: score 118.7, E = 2.8e-34 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl +R+ ++ +G+L ++g+++g +l+++L+ G++ ++d fj09987 1261 IRP-RSLTGILIHIGSQpG---------K-HLCVYLEAGKVTASMDS 1296 G.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgss G +g+++++t++++l+DGqWH+V+v+++++ ++L++D ++ ++++ + + fj09987 1297 GaGGTsTSVTPKqSLCDGQWHSVAVTIKQHILHLELDTDsSYtAgQIPFP 1346 dtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin +++pl+lGG+p ++ + ++++ ++F GC+rn+ +n fj09987 1347 ---PASTQEPLHLGGAPANLTTLRIPV---------WkSFFGCLRNIHVN 1384 ge<-* ++ fj09987 1385 HI 1386 //