hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-10441955/chunk_1/iprscan-20080810-10441955.nocrc
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Query sequence: fj09987
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00282                                                 430.9   6.6e-125   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00282    1/5     489   645 ..     1   137 []    28.1   0.0012
SM00282    2/5     693   821 ..     1   137 []    85.9  4.8e-21
SM00282    3/5     864   979 ..     1   137 []    71.7  9.3e-17
SM00282    4/5    1083  1211 ..     1   137 []   120.5  1.9e-31
SM00282    5/5    1253  1386 ..     1   137 []   124.8  9.7e-33

Alignments of top-scoring domains:
SM00282: domain 1 of 5, from 489 to 645: score 28.1, E = 0.0012
                   *->t.lsisfsFrTtspn......GlLlyag....ggdflaleLvlEDsd
                      t+ls+ ++ r+ s +++++++ + +y+g+++   d++ +++v     
     fj09987   489    TsLSLFLQ-RPNSREnggtenMFVMYLGnkdaSRDYIGMAVV----- 529  

                   gdGrlvlrydlGssttggparltsdsd.....rptplnDGqWHrVsvern
                    dG+l+ +y+lG+    ++a+l++d++ +++++++ + D    rV+++r 
     fj09987   530 -DGQLTCVYNLGD----REAELQVDQIltkseTKEAVMD----RVKFQRI 570  

                   grsvtLsVDggnpvsges.............t.LdldkeesgplylGGlP
                    + ++L   +g++ s   +++  + ++++++t L+ld+ e+  +y+GG P
     fj09987   571 YQFARLNYTKGATSSKPEtpgvydmdgrnsnTlLNLDP-ENVVFYVGGYP 619  

                   e......lpvspgFrGCirnlrvngk<-*
                   ++ + ++ ++ p+++GCi+   +n++   
     fj09987   620 PdfklpsRLSFPPYKGCIELDDLNEN    645  

SM00282: domain 2 of 5, from 693 to 821: score 85.9, E = 4.8e-21
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                      +  ++  +++Tt ++GlL++a +g+ f++l ++      dG+l++ry
     fj09987   693    PiPTFGQTIQTTVDRGLLFFAEnGDRFISLNIE------DGKLMVRY 733  

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv
                    l+s    +  + +  +     +n G+ H++++ + + + +++++  + +
     fj09987   734 KLNS----ELPKERGVG---DAINNGRDHSIQIKIGKLQKRMWIN-VDVQ 775  

                   sges..t.LdldkeesgplylGGlPe......lpvspgFrGCirnlrvng
                   ++ ++++ +d+     + +ylGG+P   +++   ++p FrGC++nl+  +
     fj09987   776 NTIIdgEvFDF-----STYYLGGIPIairerfNISTPAFRGCMKNLKKTS 820  

                   k<-*
                       
     fj09987   821 G    821  

SM00282: domain 3 of 5, from 864 to 979: score 71.7, E = 9.3e-17
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                      ++l+ sf F+T++p+G+Ll + + +  l++ L+      dG+++l+ 
     fj09987   864    DhLQASFGFQTFQPSGILLDHQtWTRNLQVTLE------DGYIELST 904  

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv
                   +  +    gp+  +++     ++ DG  H Vsv+ +++ ++L +D+++  
     fj09987   905 SDSG----GPIFKSPQ-----TYMDGLLHYVSVISDNSGLRLLIDDQLLR 945  

                   sges.t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk<-*
                   + +  +++ + +    +l lGG       ++F GCi+n++v++    
     fj09987   946 NSKRlKhISSSR---QSLRLGG-------SNFEGCISNVFVQRL    979  

SM00282: domain 4 of 5, from 1083 to 1211: score 120.5, E = 1.9e-31
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                      +++++ ++++Tts++Gl +++g++++f+al+L+       Grlv+ +
     fj09987  1083    PrSQFAVDMQTTSSRGLVFHTGtKNSFMALYLS------KGRLVFAL 1123 

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv
                    +++     + r+ s+    ++ nDG+WH+V++ ++g +++L+VD g+++
     fj09987  1124 GTDG----KKLRIKSK----EKCNDGKWHTVVFGHDGEKGRLVVD-GLRA 1164 

                   sges....t.LdldkeesgplylGGlPe....lpvspgFrGCirnlrvng
                   ++ s ++++++       +p+ylG  P+++++++ +++F+GC++n+++++
     fj09987  1165 REGSlpgnStISIR----APVYLGSPPSgkpkSLPTNSFVGCLKNFQLDS 1210 

                   k<-*
                   k   
     fj09987  1211 K    1211 

SM00282: domain 5 of 5, from 1253 to 1386: score 124.8, E = 9.7e-33
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                      +++++ fs+r++s +G+L ++g+++g +l+++L+       G+++ +
     fj09987  1253    PeFKLVFSIRPRSLTGILIHIGsqPGKHLCVYLE------AGKVTAS 1293 

                   ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnp
                   +d G+    g +++++++  +++l+DGqWH+V+v+++++ ++L +D +++
     fj09987  1294 MDSGA----GGTSTSVTP--KQSLCDGQWHSVAVTIKQHILHLELD-TDS 1336 

                   vsges....t.LdldkeesgplylGGlPe......lpvspgFrGCirnlr
                    ++  + + ++  ++    +pl+lGG+P++ ++ ++pv+++F GC+rn+ 
     fj09987  1337 SYTAGqipfPpASTQ----EPLHLGGAPAnlttlrIPVWKSFFGCLRNIH 1382 

                   vngk<-*
                   vn+    
     fj09987  1383 VNHI    1386 

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