hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-10504075/chunk_1/iprscan-20080810-10504075.nocrc
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Query sequence: fj10280
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                       107.7    3.1e-29   7
PF00515.18.ls Tetratricopeptide repeat                       106.3    8.4e-29   7
PF00515.18.fs Tetratricopeptide repeat                        94.9    5.1e-26   7
PF07719.7.fs Tetratricopeptide repeat                        93.8    3.1e-25   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00515.18.fs   1/7     294   327 ..     1    34 []    25.4  3.2e-06
PF07719.7.ls   1/7     294   327 ..     1    34 []    25.1  0.00023
PF00515.18.ls   1/7     294   327 ..     1    34 []    27.4  4.8e-05
PF00515.18.ls   2/7     618   651 ..     1    34 []     8.2     0.52
PF00515.18.fs   4/7     688   717 ..     1    30 [.    23.6    1e-05
PF00515.18.ls   4/7     688   721 ..     1    34 []    24.2  0.00044
PF07719.7.ls   4/7     688   721 ..     1    34 []    25.1  0.00023
PF00515.18.fs   7/7    1141  1174 ..     1    34 []    26.4  1.7e-06
PF07719.7.ls   7/7    1141  1174 ..     1    34 []    24.8  0.00028
PF00515.18.ls   7/7    1141  1174 ..     1    34 []    28.4  2.4e-05

Alignments of top-scoring domains:
PF00515.18.fs: domain 1 of 7, from 294 to 327: score 25.4, E = 3.2e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                         yy lGn+y  lg+y+  + +y+ AL+ +P +   
     fj10280   294    FTSYYTLGNIYAMLGEYNHSVLCYDHALQARPGF    327  

PF07719.7.ls: domain 1 of 7, from 294 to 327: score 25.1, E = 0.00023
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      +  +y lG++y+ lg+y   + +y+ Al+  P     
     fj10280   294    FTSYYTLGNIYAMLGEYNHSVLCYDHALQARPGF    327  

PF00515.18.ls: domain 1 of 7, from 294 to 327: score 27.4, E = 4.8e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                         yy lGn+y  lg+y+  + +y+ AL+ +P +   
     fj10280   294    FTSYYTLGNIYAMLGEYNHSVLCYDHALQARPGF    327  

PF00515.18.ls: domain 2 of 7, from 618 to 651: score 8.2, E = 0.52
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      + +++  G+  ++ g+   Ai+++++AL l P     
     fj10280   618    WLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ    651  

PF00515.18.fs: domain 4 of 7, from 688 to 717: score 23.6, E = 1e-05
                   *->aeayynlGnaylklgkydeAieayekALel<-*
                      + ++  lGnayl+l++   A+ea+++AL+l   
     fj10280   688    PLTFLSLGNAYLALKNISGALEAFRQALKL    717  

PF00515.18.ls: domain 4 of 7, from 688 to 721: score 24.2, E = 0.00044
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      + ++  lGnayl+l++   A+ea+++AL+l  ++   
     fj10280   688    PLTFLSLGNAYLALKNISGALEAFRQALKLTTKC    721  

PF07719.7.ls: domain 4 of 7, from 688 to 721: score 25.1, E = 0.00023
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      +     lG+ay++l++   Alea+++Al+l  ++   
     fj10280   688    PLTFLSLGNAYLALKNISGALEAFRQALKLTTKC    721  

PF00515.18.fs: domain 7 of 7, from 1141 to 1174: score 26.4, E = 1.7e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a  ++ lGn+y +++++++A+  ye  L+l+P++   
     fj10280  1141    AVNHFTLGNVYVAMEEFEKALVWYESTLKLQPEF    1174 

PF07719.7.ls: domain 7 of 7, from 1141 to 1174: score 24.8, E = 0.00028
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a  ++ lG++y +++++e+Al +ye  l+l P+    
     fj10280  1141    AVNHFTLGNVYVAMEEFEKALVWYESTLKLQPEF    1174 

PF00515.18.ls: domain 7 of 7, from 1141 to 1174: score 28.4, E = 2.4e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a  ++ lGn+y +++++++A+  ye  L+l+P++   
     fj10280  1141    AVNHFTLGNVYVAMEEFEKALVWYESTLKLQPEF    1174 

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