hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-10504075/chunk_1/iprscan-20080810-10504075.nocrc
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Query sequence: fj10280
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                 113.2    2.8e-29   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/7     294   327 ..     1    34 []    27.6   0.0017
SM00028    2/7     618   651 ..     1    34 []    12.2       21
SM00028    3/7     654   687 ..     1    34 []     2.7  2.5e+02
SM00028    4/7     688   721 ..     1    34 []    28.5  0.00094
SM00028    5/7    1071  1104 ..     1    34 []    10.5       32
SM00028    6/7    1107  1140 ..     1    34 []     6.6       90
SM00028    7/7    1141  1174 ..     1    34 []    25.2   0.0092

Alignments of top-scoring domains:
SM00028: domain 1 of 7, from 294 to 327: score 27.6, E = 0.0017
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         +y lGn+y  lg+y+  + +y+ AL+  P +   
     fj10280   294    FTSYYTLGNIYAMLGEYNHSVLCYDHALQARPGF    327  

SM00028: domain 2 of 7, from 618 to 651: score 12.2, E = 21
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      + +l+  G+ +++ g+   Ai+++++AL l+P     
     fj10280   618    WLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ    651  

SM00028: domain 3 of 7, from 654 to 687: score 2.7, E = 2.5e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         l nl+n++ + g + +A + + +AL+++ +    
     fj10280   654    DVPLVNLANLLIHYGLHLDATKLLLQALAINSSE    687  

SM00028: domain 4 of 7, from 688 to 721: score 28.5, E = 0.00094
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      + +++ lGnayl+l+++  A+e++++AL+l  ++   
     fj10280   688    PLTFLSLGNAYLALKNISGALEAFRQALKLTTKC    721  

SM00028: domain 5 of 7, from 1071 to 1104: score 10.5, E = 32
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +   +  ++ ++ +g+ ++Ai+++++AL  +P+    
     fj10280  1071    WVLSSMAALYWRVKGQGKKAIDCLRQALHYAPHQ    1104 

SM00028: domain 6 of 7, from 1107 to 1140: score 6.6, E = 90
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         l  l+n++++ + +++A+   + A+e++P++   
     fj10280  1107    DVPLISLANILHNAKLWNDAVIVATMAVEIAPHF    1140 

SM00028: domain 7 of 7, from 1141 to 1174: score 25.2, E = 0.0092
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a  ++ lGn+y +++++++A+  ye  L+l+P++   
     fj10280  1141    AVNHFTLGNVYVAMEEFEKALVWYESTLKLQPEF    1174 

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