hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-11043584/chunk_1/iprscan-20080810-11043584.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj10308y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.fs Dynein heavy chain 849.0 5.8e-256 1 PF03028.6.ls Dynein heavy chain 850.7 6.6e-253 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03028.6.fs 1/1 1275 1970 .. 1 783 [] 849.0 5.8e-256 PF03028.6.ls 1/1 1275 1970 .. 1 783 [] 850.7 6.6e-253 Alignments of top-scoring domains: PF03028.6.fs: domain 1 of 1, from 1275 to 1970: score 849.0, E = 5.8e-256 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk l++ p+p w+ d+ W ++ Ls+l +F++ d++ +n+ k Wk fj10308y2 1275 LKACPPKPS-KWILDITWLNLVELSKLRQFSDVLDQISRNE--KMWK 1318 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty w+d+e+P Eee+lP ++ + + F++Lll+R PDR+++ fj10308y2 1319 IWFDKENP-EEEPLPNAYD---------KSLDCFRRLLLIRSWCPDRTIA 1358 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk +r+++ + Gek+ e+ ldl+k e eS+p tP+++ LS G+DP+ fj10308y2 1359 QARKYIVDSM-GEKYAEG-VILDLEKTWE-ESDPRTPLICLLSMGSDPTD 1405 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ ++ +L+k ++ + + ++S+GQGQ++ A+k++ + +G W lLQ fj10308y2 1406 SIIALGKRLK------IETRYVSMGQGQEV-HARKLLQQTMANGGWALLQ 1448 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl N+HL ++++ +L + +++ +H FRL++T+E + + fPi+l fj10308y2 1449 NCHLGLDFMDELMDIIIETEL---VHDAFRLWMTTEVHKQ-----FPITL 1490 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL Lq+SiK+ N PP Gl+A L+r+ys ++q+ l+ ++ +k++l++ fj10308y2 1491 LQMSIKFANDPPQGLRAGLKRTYSG---VSQDLLDVSSGS-QWKPMLYAV 1536 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi +f+H++VqERRkFG lGWN++YEFN++D+ v++++n+L+++ fj10308y2 1537 AFLHSTVQERRKFGALGWNIPYEFNQADFNATVQFIQNHLDDM------- 1579 dpdk..vPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgn + k++v W+++RY++Gei+YGGr+tDd+D+RLL+t+ f + +f + fj10308y2 1580 -DVKkgVSWTTIRYMIGEIQYGGRVTDDYDKRLLNTFAKVWFSENMFGP- 1627 adyeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAE d++++ g+ +P ++++ Y++yI+ LP +sPe+fGLhpNA+ fj10308y2 1628 -DFSFYQ------GYNIPKCSTVDNYLQYIQS-LPAYDSPEVFGLHPNAD 1669 IgfltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvl I+++ + +++ ++t+l Qp++ + gg++ +r E vv ++ fj10308y2 1670 ITYQSKLAKDVLDTILGIQPKDTS----GGGD--ETR-----EAVVARLA 1708 rdileklpkklCq.klFdkeelmlkrteeikdPlfvVlvQEiermNkLlk +d leklp +F +e +k ++ +P++++l+QEi+rm +l+ fj10308y2 1709 DDMLEKLP---PDyVPFEVKERLQKM--GPFQPMNIFLRQEIDRMQRVLS 1753 eirrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslk +r +L eL l++ G++ ms++l++ +++++ +r+Pa W+k s+ s fj10308y2 1754 LVRSTLTELKLAIDGTIIMSENLRDALDCMFDARIPA--WWKKASWVS-S 1800 pLgsWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAim +Lg W+t L +R Q+ W + g+P ++W++GFFnPQ FLTA++ fj10308y2 1801 TLGFWFTELIERNSQFTSWVFN------GRPHCFWMTGFFNPQGFLTAMR 1844 QsvARkn.kwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGAr Q++ R+n++w LD+++L eVtk k+++++ pP++GvyV+GL+LEGA fj10308y2 1845 QEITRANkGWALDNMVLCNEVTKWMKDDISA--PPTEGVYVYGLYLEGAG 1892 WDsktgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaR WD +++ l+eskpK+Lf mPVi++ a +++ y+cP Yk R fj10308y2 1893 WDKRNMKLIESKPKVLFELMPVIRIYAENN-TLRDPR-FYSCPIYKKPVR 1940 ggvLSTTGHStnyvftfnLktkedtpaskWilaGVALllq<-* + +ny+ +++L+t++ ++++W+l+GVALl++ fj10308y2 1941 TD--------LNYIAAVDLRTAQ--TPEHWVLRGVALLCD 1970 PF03028.6.ls: domain 1 of 1, from 1275 to 1970: score 850.7, E = 6.6e-253 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk l++ p+p w+ d+ W ++ Ls+l +F++ d++ +n+ k Wk fj10308y2 1275 LKACPPKPS-KWILDITWLNLVELSKLRQFSDVLDQISRNE--KMWK 1318 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty w+d+e+P Eee+lP ++ + + F++Lll+R PDR+++ fj10308y2 1319 IWFDKENP-EEEPLPNAYD---------KSLDCFRRLLLIRSWCPDRTIA 1358 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk +r+++ + Gek+ e+ ldl+k e eS+p tP+++ LS G+DP+ fj10308y2 1359 QARKYIVDSM-GEKYAEG-VILDLEKTWE-ESDPRTPLICLLSMGSDPTD 1405 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ ++ +L+k ++ + + ++S+GQGQ++ A+k++ + +G W lLQ fj10308y2 1406 SIIALGKRLK------IETRYVSMGQGQEV-HARKLLQQTMANGGWALLQ 1448 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl N+HL ++++ +L + +++ +H FRL++T+E + + fPi+l fj10308y2 1449 NCHLGLDFMDELMDIIIETEL---VHDAFRLWMTTEVHKQ-----FPITL 1490 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL Lq+SiK+ N PP Gl+A L+r+ys ++q+ l+ ++ +k++l++ fj10308y2 1491 LQMSIKFANDPPQGLRAGLKRTYSG---VSQDLLDVSSGS-QWKPMLYAV 1536 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi +f+H++VqERRkFG lGWN++YEFN++D+ v++++n+L+++ fj10308y2 1537 AFLHSTVQERRKFGALGWNIPYEFNQADFNATVQFIQNHLDDM------- 1579 dpdk..vPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgn + k++v W+++RY++Gei+YGGr+tDd+D+RLL+t+ f + +f + fj10308y2 1580 -DVKkgVSWTTIRYMIGEIQYGGRVTDDYDKRLLNTFAKVWFSENMFGP- 1627 adyeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAE d++++ g+ +P ++++ Y++yI+ LP +sPe+fGLhpNA+ fj10308y2 1628 -DFSFYQ------GYNIPKCSTVDNYLQYIQS-LPAYDSPEVFGLHPNAD 1669 IgfltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvl I+++ + +++ ++t+l Qp++ + gg++ +r E vv ++ fj10308y2 1670 ITYQSKLAKDVLDTILGIQPKDTS----GGGD--ETR-----EAVVARLA 1708 rdileklpkklCq.klFdkeelmlkrteeikdPlfvVlvQEiermNkLlk +d leklp +F +e +k ++ +P++++l+QEi+rm +l+ fj10308y2 1709 DDMLEKLP---PDyVPFEVKERLQKM--GPFQPMNIFLRQEIDRMQRVLS 1753 eirrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslk +r +L eL l++ G++ ms++l++ +++++ +r+Pa W+k s+ s fj10308y2 1754 LVRSTLTELKLAIDGTIIMSENLRDALDCMFDARIPA--WWKKASWVS-S 1800 pLgsWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAim +Lg W+t L +R Q+ W + g+P ++W++GFFnPQ FLTA++ fj10308y2 1801 TLGFWFTELIERNSQFTSWVFN------GRPHCFWMTGFFNPQGFLTAMR 1844 QsvARkn.kwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGAr Q++ R+n++w LD+++L eVtk k+++++ pP++GvyV+GL+LEGA fj10308y2 1845 QEITRANkGWALDNMVLCNEVTKWMKDDISA--PPTEGVYVYGLYLEGAG 1892 WDsktgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaR WD +++ l+eskpK+Lf mPVi++ a +++ y+cP Yk R fj10308y2 1893 WDKRNMKLIESKPKVLFELMPVIRIYAENN-TLRDPR-FYSCPIYKKPVR 1940 ggvLSTTGHStnyvftfnLktkedtpaskWilaGVALllq<-* + +ny+ +++L+t++ ++++W+l+GVALl++ fj10308y2 1941 TD--------LNYIAAVDLRTAQ--TPEHWVLRGVALLCD 1970 //