hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-11103117/chunk_1/iprscan-20080810-11103117.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj10387 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00003.12.ls 7 transmembrane receptor (metabotropic g 473.2 2.9e-139 1 PF00003.12.fs 7 transmembrane receptor (metabotropic g 471.3 1.1e-138 1 PF01094.18.fs Receptor family ligand binding region 144.1 3.5e-40 1 PF07562.4.fs Nine Cysteines Domain of family 3 GPCR 66.8 7e-20 1 PF07562.4.ls Nine Cysteines Domain of family 3 GPCR 68.7 1.7e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.fs 1/1 1 240 [. 167 421 .] 144.1 3.5e-40 PF07562.4.fs 1/1 274 309 .. 1 37 [] 66.8 7e-20 PF07562.4.ls 1/1 274 309 .. 1 37 [] 68.7 1.7e-17 PF00003.12.ls 1/1 349 610 .. 1 279 [] 473.2 2.9e-139 PF00003.12.fs 1/1 349 610 .. 1 279 [] 471.3 1.1e-138 Alignments of top-scoring domains: PF01094.18.fs: domain 1 of 1, from 1 to 240: score 144.1, E = 3.5e-40 *->ggkvvavAqasdvvvvsevissdddftallkelkdlik.skarvivl gg ++a+ +v ++ + d +++++++k+l+ ++++r +v+ fj10387 1 GGLCIAQ-------SVRIPQERKDRTIDFDRIIKQLLDtPNSRAVVI 40 cgssddlgllkrqilrqarelGl.msggYvwiltdlwsdsldsqgdgsdl +++++d+ +qil +a + + g++ w+++d+w++ fj10387 41 FANDEDI----KQILAAA--KRAdQVGHFLWVGSDSWGSKI--------- 75 pwariagadeGlltartfpfqldndkareaakgvlgitlk.p.spefqef + ++ a+g ++i++k++++ +f+ + fj10387 76 ---------------------NPLHQHEDIAEGAITIQPKrAtVEGFDAY 104 lerlkk............................................ +++++ ++++++ + +++ + + + +++++++++++ +++++ +++ fj10387 105 FTSRTLennrrnvwfaeyweenfnckltisgskkedtdrkctgqerigkd 154 sdtevnayallaYDAVyllAhAlnealrddpngtaglcnacrdsrvddas s++e+++ ++++ DAVy++AhAl+++++d+++ ++g c++ fj10387 155 SNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPE---------- 194 nalgglnlglmkw.dGsqlleylrnkvnFeGltGdvqfddnggrrpdysl m + G++ll+y+rn vnF+G +G+ +++ ++g+ p+++ fj10387 195 ----------MEQaGGKKLLKYIRN-VNFNGSAGTPVMFNKNGDAPGRYD 233 vilnwdg<-* ++++++ fj10387 234 IFQYQTT 240 PF07562.4.fs: domain 1 of 1, from 274 to 309: score 66.8, E = 7e-20 *->PvSvCSepCppGqrKkiqkGepiCCfdCvpCpdgeys<-* P SvC++pC+pGqrKk+qkG p CC+ C+pC ++y+ fj10387 274 PASVCTLPCKPGQRKKTQKGTP-CCWTCEPCDGYQYQ 309 PF07562.4.ls: domain 1 of 1, from 274 to 309: score 68.7, E = 1.7e-17 *->PvSvCSepCppGqrKkiqkGepiCCfdCvpCpdgeys<-* P SvC++pC+pGqrKk+qkG p CC+ C+pC ++y+ fj10387 274 PASVCTLPCKPGQRKKTQKGTP-CCWTCEPCDGYQYQ 309 PF00003.12.ls: domain 1 of 1, from 349 to 610: score 473.2, E = 2.9e-139 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc +v+lA+lG i++T+fV+++F++++dTPiV+As+reLSY+LL g++lc fj10387 349 PVFLAMLG-IIATIFVMATFIRYNDTPIVRASGRELSYVLLTGIFLC 394 flcsflFIgkGtvekPsewsCiLRrilfGlgFtlcySalLaKTirVlraF + ++fl+I+k P+ ++C++Rr ++Glg++++y alL+KT+r++r+F fj10387 395 YIITFLMIAK-----PDVAVCSFRRVFLGLGMCISYAALLTKTNRIYRIF 439 rkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdkdi +++ ++s++ +++isp++q++i+ +l+++Q+++++iW++v+PP +++d+ fj10387 440 EQG--KKSVTAPRLISPTSQLAITSSLISVQLLGVFIWFGVDPPNIIIDY 487 hsekekeedeDvsiapiileCnkgsvvaFvvvLgYlglLavlcfflAflt +++k++++ ++a+++l+C++++ ++ +++LgY+ lL+v+c+++A++t fj10387 488 DEHKTMNP----EQARGVLKCDITD-LQIICSLGYSILLMVTCTVYAIKT 532 RklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykvqva R +P +nFNEAK+I+F+M +t+CiVW+AFiP++++t +sae++++q++ fj10387 533 RGVP-ENFNEAKPIGFTM---YTTCIVWLAFIPIFFGTAQSAEKLYIQTT 578 veifsIlaSStglLgciFaPKcYIILfkPekn<-* ++++s+ +S++++Lg++++PK+YII+f+Pe n fj10387 579 TLTISMNLSASVALGMLYMPKVYIIIFHPELN 610 PF00003.12.fs: domain 1 of 1, from 349 to 610: score 471.3, E = 1.1e-138 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc +v+lA+lG i++T+fV+++F++++dTPiV+As+reLSY+LL g++lc fj10387 349 PVFLAMLG-IIATIFVMATFIRYNDTPIVRASGRELSYVLLTGIFLC 394 flcsflFIgkGtvekPsewsCiLRrilfGlgFtlcySalLaKTirVlraF + ++fl+I+k P+ ++C++Rr ++Glg++++y alL+KT+r++r+F fj10387 395 YIITFLMIAK-----PDVAVCSFRRVFLGLGMCISYAALLTKTNRIYRIF 439 rkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdkdi +++ ++s++ +++isp++q++i+ +l+++Q+++++iW++v+PP +++d+ fj10387 440 EQG--KKSVTAPRLISPTSQLAITSSLISVQLLGVFIWFGVDPPNIIIDY 487 hsekekeedeDvsiapiileCnkgsvvaFvvvLgYlglLavlcfflAflt +++k++++ ++a+++l+C++++ ++ +++LgY+ lL+v+c+++A++t fj10387 488 DEHKTMNP----EQARGVLKCDITD-LQIICSLGYSILLMVTCTVYAIKT 532 RklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykvqva R +P +nFNEAK+I+F+M +t+CiVW+AFiP++++t +sae++++q++ fj10387 533 RGVP-ENFNEAKPIGFTM---YTTCIVWLAFIPIFFGTAQSAEKLYIQTT 578 veifsIlaSStglLgciFaPKcYIILfkPekn<-* ++++s+ +S++++Lg++++PK+YII+f+Pe n fj10387 579 TLTISMNLSASVALGMLYMPKVYIIIFHPELN 610 //