hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-11355518/chunk_1/iprscan-20080810-11355518.nocrc
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Query sequence: fj10535
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01299.8.ls Lysosome-associated membrane glycoprotein (L   781.3   5.3e-232   1
PF01299.8.fs Lysosome-associated membrane glycoprotein (L   779.3   2.1e-231   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01299.8.fs   1/1      91   458 .]     1   390 []   779.3 2.1e-231
PF01299.8.ls   1/1      91   458 .]     1   390 []   781.3 5.3e-232

Alignments of top-scoring domains:
PF01299.8.fs: domain 1 of 1, from 91 to 458: score 779.3, E = 2.1e-231
                   *->AnlsvnFsvkYeTtlnkqnktfdlpskatVthngSsCGsdnvsdPkl
                      A++++nF+v+YeTt nk++kt++++++ tVt+ngS+CG+d+++ Pk+
     fj10535    91    AKWQMNFTVRYETT-NKTYKTVTISDHGTVTYNGSICGDDQNG-PKI 135  

                   aiqFGsGhswtlnFTKnatrYsvesitfsYNlsDtthFPnAtskgivTVd
                   a+qFG+G+sw++nFTK+a++Ys++s++fsYN++D+t+FP+A++kgi+TVd
     fj10535   136 AVQFGPGFSWIANFTKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVD 185  

                   sksdikadlnkpfrCtssttvemknVtqtlwdatvqAfvqNgtfSknetr
                   +  +i+++ln+ frC+s++t+e+++V+q++wd+ vqAfvqNgt+S+ne+ 
     fj10535   186 ELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFL 235  

                   CeeDkpspTvaPtihttvptastTitPsPsPtPvpkenPtvGnYsvtngN
                   C++Dk+ +TvaPtihttvp+      P+++PtP++k  P++G+Ysv+ngN
     fj10535   236 CDKDKT-STVAPTIHTTVPS------PTTTPTPKEK--PEAGTYSVNNGN 276  

                   gTCLLAsmgLQLNItyekkdnktvtrilNinPntTkasGsCestsatLkL
                   +TCLLA+mgLQLNIt++k     v++++NinPntT+++GsC+s++a L+L
     fj10535   277 DTCLLATMGLQLNITQDK-----VASVININPNTTHSTGSCRSHTALLRL 321  

                   nfsqityLdFgFavnassspvvkFyLqeVnvnmtlpdAngstFsasNnsL
                   n+s+i+yLdF+Fav+ +++   +FyL+eVn++m+l+  ngs+Fs++Nn+L
     fj10535   322 NSSTIKYLDFVFAVK-NEN---RFYLKEVNISMYLV--NGSVFSIANNNL 365  

                   selqApLGnSYkCnkEesisVskafqlnvFnLrVQAFkVtdkgkFGsaee
                   s+++ApLG+SY+CnkE+++sVs afq+n+F+LrVQ+F+Vt +gk+++aee
     fj10535   366 SYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVT-QGKYSTAEE 414  

                   CsaDed.NfLiPIaVGaALaGLllLVLIAYlIGRKRshaGYQti<-*
                   CsaD+d NfLiP+aVG AL++L++ V+I+Y+IGR++s++GYQ++   
     fj10535   415 CSADSDlNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV    458  

PF01299.8.ls: domain 1 of 1, from 91 to 458: score 781.3, E = 5.3e-232
                   *->AnlsvnFsvkYeTtlnkqnktfdlpskatVthngSsCGsdnvsdPkl
                      A++++nF+v+YeTt nk++kt++++++ tVt+ngS+CG+d+++ Pk+
     fj10535    91    AKWQMNFTVRYETT-NKTYKTVTISDHGTVTYNGSICGDDQNG-PKI 135  

                   aiqFGsGhswtlnFTKnatrYsvesitfsYNlsDtthFPnAtskgivTVd
                   a+qFG+G+sw++nFTK+a++Ys++s++fsYN++D+t+FP+A++kgi+TVd
     fj10535   136 AVQFGPGFSWIANFTKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVD 185  

                   sksdikadlnkpfrCtssttvemknVtqtlwdatvqAfvqNgtfSknetr
                   +  +i+++ln+ frC+s++t+e+++V+q++wd+ vqAfvqNgt+S+ne+ 
     fj10535   186 ELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFL 235  

                   CeeDkpspTvaPtihttvptastTitPsPsPtPvpkenPtvGnYsvtngN
                   C++Dk+ +TvaPtihttvp+      P+++PtP++k  P++G+Ysv+ngN
     fj10535   236 CDKDKT-STVAPTIHTTVPS------PTTTPTPKEK--PEAGTYSVNNGN 276  

                   gTCLLAsmgLQLNItyekkdnktvtrilNinPntTkasGsCestsatLkL
                   +TCLLA+mgLQLNIt++k     v++++NinPntT+++GsC+s++a L+L
     fj10535   277 DTCLLATMGLQLNITQDK-----VASVININPNTTHSTGSCRSHTALLRL 321  

                   nfsqityLdFgFavnassspvvkFyLqeVnvnmtlpdAngstFsasNnsL
                   n+s+i+yLdF+Fav+ +++   +FyL+eVn++m+l+  ngs+Fs++Nn+L
     fj10535   322 NSSTIKYLDFVFAVK-NEN---RFYLKEVNISMYLV--NGSVFSIANNNL 365  

                   selqApLGnSYkCnkEesisVskafqlnvFnLrVQAFkVtdkgkFGsaee
                   s+++ApLG+SY+CnkE+++sVs afq+n+F+LrVQ+F+Vt +gk+++aee
     fj10535   366 SYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVT-QGKYSTAEE 414  

                   CsaDed.NfLiPIaVGaALaGLllLVLIAYlIGRKRshaGYQti<-*
                   CsaD+d NfLiP+aVG AL++L++ V+I+Y+IGR++s++GYQ++   
     fj10535   415 CSADSDlNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV    458  

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