hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-14550636/chunk_1/iprscan-20090525-14550636.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj10696 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02463.9.ls RecF/RecN/SMC N terminal domain 398.5 8.9e-117 1 PF02463.9.fs RecF/RecN/SMC N terminal domain 396.6 3.3e-116 1 PF06470.4.fs SMC proteins Flexible Hinge Domain 115.3 3.2e-34 1 PF06470.4.ls SMC proteins Flexible Hinge Domain 117.2 4.3e-32 1 PF02370.7.ls M protein repeat 20.8 0.0046 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02463.9.fs 1/1 27 1222 .. 1 243 [] 396.6 3.3e-116 PF02463.9.ls 1/1 27 1222 .. 1 243 [] 398.5 8.9e-117 PF06470.4.fs 1/1 554 668 .. 1 124 [] 115.3 3.2e-34 PF06470.4.ls 1/1 554 668 .. 1 124 [] 117.2 4.3e-32 Alignments of top-scoring domains: PF02463.9.fs: domain 1 of 1, from 27 to 1222: score 396.6, E = 3.3e-116 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV y+k+++++gF+SY+++ti+ pFs +++IvG+NGSGKSN+++AI+FV fj10696 27 YIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 73 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh L++ ++LR e++ +L h+ ++g++v sA V+i+F dn+d++ fj10696 74 LSD-EFSHLRPEQRLALLHE--GTGPRVISAFVEIIF------DNSDNR- 113 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa lpid+ee vs++R ++ ++d +Y+++ k vtk +dv++LLesa fj10696 114 -----LPIDKEE-VSLRRVIGAKKD---QYFLDKKMVTK-NDVMNLLESA 153 RF xxxxx GIske............................................. G+s+++ ++ + ++ + ++++++++ + ++++++ + fj10696 154 GFSRSnpyyivkqgkinqmatapdsqrlkllrevagtrvyderkeesisl 203 RF .................................................. ++ + ++++ +++++ ++++ ++++++++ + ++ ++ ++ ++ fj10696 204 mketegkrekinellkyieerlhtleeekeelaqyqkwdkmrraleytiy 253 RF .................................................. ++++++ + +++++ +++ ++ +++++ +++ +++ ++ +++ ++++ fj10696 254 nqelnetrakldelsakretsgeksrqlrdaqqdardkmedierqvrelk 303 RF .................................................. + +++++++ +++++ +++ +++++ +++++++ + ++++++++ fj10696 304 tkisamkeekeqlsaerqeqikqrtklelkakdlqdelagnseqrkrllk 353 RF .................................................. ++++++++ +++++++ + + + + ++++++ ++ + +++ ++ + fj10696 354 erqkllekieekqkelaetepkfnsvkekeergiarlaqatqertdlyak 403 RF .................................................. + + + ++++++ +++++ +++ ++++++ +++++ + +++ fj10696 404 qgrgsqftskeerdkwikkelksldqaindkkrqiaaihkdledteanke 453 RF .................................................. +++++ +++++++++ + + ++++++ + ++++++++ +++ + ++++ fj10696 454 knleqynkldqdlnevkarveeldrkyyevknkkdelqsernylwreena 503 RF .................................................. +++ + +++++++++++++ + ++ + ++ ++ +++ ++ fj10696 504 eqqalaakredlekkqqllraatgkailngidsinkvldhfrrkginqhv 553 RF .................................................. ++ ++ + + + +++ + ++ + + + ++ fj10696 554 qngyhgivmnnfecepafytcvevtagnrlfyhivdsdevstkilmefnk 603 RF .................................................. ++ + + +++++ ++ + ++ +++ + + ++ + fj10696 604 mnlpgevtflplnkldvrdtaypetndaipmisklrynprfdkafkhvfg 653 RF .................................................. + + + + ++ + + ++ ++ + + + ++ ++++ fj10696 654 ktlicrsmevstqlaraftmdcitlegdqvshrgaltggyydtrksrlel 703 RF .................................................. +++ ++ ++++ +++ +++++++++ ++ +++ +++ ++ ++ + ++++ fj10696 704 qkdvrkaeeelgeleaklnenlrrnierinneidqlmnqmqqietqqrkf 753 RF .................................................. + ++ + + + +++++++ ++ +++ ++ ++ + + ++ ++ fj10696 754 kasrdsilsemkmlkekrqqsektfmpkqrslqsleaslhamestreslk 803 RF .................................................. ++ +++ ++ ++++++ + ++++ ++++++++++++++ +++ + fj10696 804 aelgtdllsqlsledqkrvdalndeirqlqqenrqllneriklegiitrv 853 RF .................................................. + +++++++++++ +++++++++ + + +++ +++ ++ fj10696 854 etylnenlrkrldqveqelnelreteggtvltattseleainkrvkdtma 903 RF .................................................. + +++++ ++ + +++++ ++ ++ +++ + + + +++++ ++ fj10696 904 rsedldnsidkteagikelqksmerwknmekehmdainhdtkelekmtnr 953 RF .................................................. + +++++++ ++ +++ + ++ ++ + + ++++ +++++ + ++++ fj10696 954 qgmllkkkeecmkkirelgslpqeafekyqtlslkqlfrkleqcntelkk 1003 RF .................................................. +++ +++ + ++++++ ++++++++ + ++ + +++++ + fj10696 1004 yshvnkkaldqfvnfseqkeklikrqeeldrgyksimelmnvlelrkyea 1053 RF .................................................. ++ ++ ++ + +++ + + ++ + + + +++ + + + fj10696 1054 iqltfkqvsknfsevfqklvpggkatlvmkkgdvegsqsqdegegsgese 1103 RF xxxxxxxxxxxxxxx ...................................nLSGGEKtLaALALl + + ++ + ++ + ++ ++LSGG+K+L+ALAL+ fj10696 1104 rgsgsqssvpsvdqftgvgirvsftgkqgemremqQLSGGQKSLVALALI 1153 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx FAQGEyliqkykPaPFYvlDEiDAALDeaNvsrvAnyiktelsknaQFIV FA iqk++PaPFY++DEiD ALD++++++v+++i el aQFI fj10696 1154 FA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIM-ELAVHAQFIT 1197 RF xxxxxxxxxxxxxxxxxxxxxxxxxx IslReemfekAdrlvGvymvengvst<-* +++R+e +e Ad+++Gv++ +n+vs+ fj10696 1198 TTFRPELLESADKFYGVKF-RNKVSH 1222 PF02463.9.ls: domain 1 of 1, from 27 to 1222: score 398.5, E = 8.9e-117 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV y+k+++++gF+SY+++ti+ pFs +++IvG+NGSGKSN+++AI+FV fj10696 27 YIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 73 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh L++ ++LR e++ +L h+ ++g++v sA V+i+F dn+d++ fj10696 74 LSD-EFSHLRPEQRLALLHE--GTGPRVISAFVEIIF------DNSDNR- 113 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa lpid+ee vs++R ++ ++d +Y+++ k vtk +dv++LLesa fj10696 114 -----LPIDKEE-VSLRRVIGAKKD---QYFLDKKMVTK-NDVMNLLESA 153 RF xxxxx GIske............................................. G+s+++ ++ + ++ + ++++++++ + ++++++ + fj10696 154 GFSRSnpyyivkqgkinqmatapdsqrlkllrevagtrvyderkeesisl 203 RF .................................................. ++ + ++++ +++++ ++++ ++++++++ + ++ ++ ++ ++ fj10696 204 mketegkrekinellkyieerlhtleeekeelaqyqkwdkmrraleytiy 253 RF .................................................. ++++++ + +++++ +++ ++ +++++ +++ +++ ++ +++ ++++ fj10696 254 nqelnetrakldelsakretsgeksrqlrdaqqdardkmedierqvrelk 303 RF .................................................. + +++++++ +++++ +++ +++++ +++++++ + ++++++++ fj10696 304 tkisamkeekeqlsaerqeqikqrtklelkakdlqdelagnseqrkrllk 353 RF .................................................. ++++++++ +++++++ + + + + ++++++ ++ + +++ ++ + fj10696 354 erqkllekieekqkelaetepkfnsvkekeergiarlaqatqertdlyak 403 RF .................................................. + + + ++++++ +++++ +++ ++++++ +++++ + +++ fj10696 404 qgrgsqftskeerdkwikkelksldqaindkkrqiaaihkdledteanke 453 RF .................................................. +++++ +++++++++ + + ++++++ + ++++++++ +++ + ++++ fj10696 454 knleqynkldqdlnevkarveeldrkyyevknkkdelqsernylwreena 503 RF .................................................. +++ + +++++++++++++ + ++ + ++ ++ +++ ++ fj10696 504 eqqalaakredlekkqqllraatgkailngidsinkvldhfrrkginqhv 553 RF .................................................. ++ ++ + + + +++ + ++ + + + ++ fj10696 554 qngyhgivmnnfecepafytcvevtagnrlfyhivdsdevstkilmefnk 603 RF .................................................. ++ + + +++++ ++ + ++ +++ + + ++ + fj10696 604 mnlpgevtflplnkldvrdtaypetndaipmisklrynprfdkafkhvfg 653 RF .................................................. + + + + ++ + + ++ ++ + + + ++ ++++ fj10696 654 ktlicrsmevstqlaraftmdcitlegdqvshrgaltggyydtrksrlel 703 RF .................................................. +++ ++ ++++ +++ +++++++++ ++ +++ +++ ++ ++ + ++++ fj10696 704 qkdvrkaeeelgeleaklnenlrrnierinneidqlmnqmqqietqqrkf 753 RF .................................................. + ++ + + + +++++++ ++ +++ ++ ++ + + ++ ++ fj10696 754 kasrdsilsemkmlkekrqqsektfmpkqrslqsleaslhamestreslk 803 RF .................................................. ++ +++ ++ ++++++ + ++++ ++++++++++++++ +++ + fj10696 804 aelgtdllsqlsledqkrvdalndeirqlqqenrqllneriklegiitrv 853 RF .................................................. + +++++++++++ +++++++++ + + +++ +++ ++ fj10696 854 etylnenlrkrldqveqelnelreteggtvltattseleainkrvkdtma 903 RF .................................................. + +++++ ++ + +++++ ++ ++ +++ + + + +++++ ++ fj10696 904 rsedldnsidkteagikelqksmerwknmekehmdainhdtkelekmtnr 953 RF .................................................. + +++++++ ++ +++ + ++ ++ + + ++++ +++++ + ++++ fj10696 954 qgmllkkkeecmkkirelgslpqeafekyqtlslkqlfrkleqcntelkk 1003 RF .................................................. +++ +++ + ++++++ ++++++++ + ++ + +++++ + fj10696 1004 yshvnkkaldqfvnfseqkeklikrqeeldrgyksimelmnvlelrkyea 1053 RF .................................................. ++ ++ ++ + +++ + + ++ + + + +++ + + + fj10696 1054 iqltfkqvsknfsevfqklvpggkatlvmkkgdvegsqsqdegegsgese 1103 RF xxxxxxxxxxxxxxx ...................................nLSGGEKtLaALALl + + ++ + ++ + ++ ++LSGG+K+L+ALAL+ fj10696 1104 rgsgsqssvpsvdqftgvgirvsftgkqgemremqQLSGGQKSLVALALI 1153 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx FAQGEyliqkykPaPFYvlDEiDAALDeaNvsrvAnyiktelsknaQFIV FA iqk++PaPFY++DEiD ALD++++++v+++i el aQFI fj10696 1154 FA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIM-ELAVHAQFIT 1197 RF xxxxxxxxxxxxxxxxxxxxxxxxxx IslReemfekAdrlvGvymvengvst<-* +++R+e +e Ad+++Gv++ +n+vs+ fj10696 1198 TTFRPELLESADKFYGVKF-RNKVSH 1222 PF06470.4.fs: domain 1 of 1, from 554 to 668: score 115.3, E = 3.2e-34 *->asgvlGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkale ++g++G v ++ + e+ + +++e+++G++L++++Vd++e+++k+l fj10696 554 QNGYHGIVMNNFEC-EPAFYTCVEVTAGNRLFYHIVDSDEVSTKILM 599 elkkar.lGRaTflPLdkikpnpvatlealpegatplaglvrlpadlidy e++k++ +G++TflPL+k+ +++ + ++ ++++ ++ + ++y fj10696 600 EFNKMNlPGEVTFLPLNKL--------DVRDTAYPETNDAIPMI-SKLRY 640 dpelrkalrrlLgqtlvVedldeArrla<-* +p ++ka+++++g tl++ +++ ++la fj10696 641 NPRFDKAFKHVFGKTLICRSMEVSTQLA 668 PF06470.4.ls: domain 1 of 1, from 554 to 668: score 117.2, E = 4.3e-32 *->asgvlGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkale ++g++G v ++ + e+ + +++e+++G++L++++Vd++e+++k+l fj10696 554 QNGYHGIVMNNFEC-EPAFYTCVEVTAGNRLFYHIVDSDEVSTKILM 599 elkkar.lGRaTflPLdkikpnpvatlealpegatplaglvrlpadlidy e++k++ +G++TflPL+k+ +++ + ++ ++++ ++ + ++y fj10696 600 EFNKMNlPGEVTFLPLNKL--------DVRDTAYPETNDAIPMI-SKLRY 640 dpelrkalrrlLgqtlvVedldeArrla<-* +p ++ka+++++g tl++ +++ ++la fj10696 641 NPRFDKAFKHVFGKTLICRSMEVSTQLA 668 //