# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj11209.fasta.nr -Q fj11209.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj11209, 310 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6816657 sequences Expectation_n fit: rho(ln(x))= 4.9594+/-0.000182; mu= 10.7722+/- 0.010 mean_var=67.1887+/-13.091, 0's: 40 Z-trim: 119 B-trim: 0 in 0/65 Lambda= 0.156468 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088014|dbj|BAD92454.1| HLA-B associated trans ( 310) 2092 480.8 1.2e-133 gi|119623817|gb|EAX03412.1| hCG2005638, isoform CR ( 290) 1938 446.0 3.4e-123 gi|74142931|dbj|BAE42496.1| unnamed protein produc ( 324) 1781 410.6 1.7e-112 gi|123270967|emb|CAI18282.2| HLA-B associated tran ( 289) 1628 376.0 4e-102 gi|123270965|emb|CAI18284.2| HLA-B associated tran ( 425) 1628 376.1 5.3e-102 gi|61217531|sp|Q5RE47.1|UAP56_PONAB Spliceosome RN ( 428) 1628 376.1 5.4e-102 gi|62897383|dbj|BAD96632.1| HLA-B associated trans ( 428) 1628 376.1 5.4e-102 gi|30585031|gb|AAP36788.1| Homo sapiens HLA-B asso ( 429) 1628 376.1 5.4e-102 gi|156602043|gb|ABU86917.1| Bat1 [Ornithorhynchus ( 451) 1628 376.2 5.6e-102 gi|122140442|sp|Q3T147|UAP56_BOVIN Spliceosome RNA ( 428) 1622 374.8 1.4e-101 gi|61217540|sp|Q5WR10|UAP56_CANFA Spliceosome RNA ( 428) 1618 373.9 2.6e-101 gi|205942|gb|AAA41787.1| liver nuclear protein p47 ( 399) 1615 373.2 3.9e-101 gi|61217662|sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA ( 428) 1615 373.2 4.1e-101 gi|509403|emb|CAA84355.1| BAT1 [Sus scrofa] ( 427) 1605 370.9 2e-100 gi|19773876|gb|AAL98920.1| Bat1 [Rattus norvegicus ( 428) 1605 370.9 2e-100 gi|61217546|sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA ( 428) 1596 368.9 8e-100 gi|123270970|emb|CAI18278.2| HLA-B associated tran ( 238) 1572 363.3 2.2e-98 gi|149446031|ref|XP_001516247.1| PREDICTED: simila ( 289) 1570 362.9 3.5e-98 gi|123270968|emb|CAI18283.2| HLA-B associated tran ( 236) 1557 359.9 2.3e-97 gi|123270969|emb|CAI18281.2| HLA-B associated tran ( 231) 1528 353.4 2.1e-95 gi|38174030|gb|AAH61280.1| HLA-B associated transc ( 428) 1521 352.0 1e-94 gi|51950262|gb|AAH82368.1| MGC81606 protein [Xenop ( 428) 1517 351.1 1.9e-94 gi|73986746|ref|XP_533895.2| PREDICTED: similar to ( 427) 1477 342.0 9.8e-92 gi|32766427|gb|AAH55240.1| HLA-B associated transc ( 435) 1477 342.1 9.9e-92 gi|126323154|ref|XP_001366378.1| PREDICTED: simila ( 427) 1474 341.4 1.6e-91 gi|59858465|gb|AAX09067.1| DEAD (Asp-Glu-Ala-Asp) ( 427) 1469 340.2 3.4e-91 gi|74214685|dbj|BAE31182.1| unnamed protein produc ( 427) 1463 338.9 8.7e-91 gi|74205930|dbj|BAE23239.1| unnamed protein produc ( 427) 1463 338.9 8.7e-91 gi|61213001|sp|Q8VDW0|DDX39_MOUSE ATP-dependent RN ( 427) 1463 338.9 8.7e-91 gi|74192407|dbj|BAE43010.1| unnamed protein produc ( 427) 1461 338.4 1.2e-90 gi|74204289|dbj|BAE39902.1| unnamed protein produc ( 427) 1459 338.0 1.6e-90 gi|74216552|dbj|BAE37719.1| unnamed protein produc ( 427) 1458 337.8 1.9e-90 gi|61212312|sp|Q5U216|DDX39_RAT ATP-dependent RNA ( 427) 1457 337.5 2.2e-90 gi|14714632|gb|AAH10455.1| DDX39 protein [Homo sap ( 316) 1455 337.0 2.4e-90 gi|171702402|dbj|BAG16272.1| DEAD (Asp-Glu-Ala-Asp ( 267) 1454 336.7 2.5e-90 gi|189517829|ref|XP_001922062.1| PREDICTED: simila ( 332) 1451 336.1 4.7e-90 gi|28278325|gb|AAH44169.1| DEAD (Asp-Glu-Ala-Asp) ( 427) 1451 336.2 5.7e-90 gi|21619414|gb|AAH32128.1| DDX39 protein [Homo sap ( 322) 1449 335.6 6.3e-90 gi|3132829|gb|AAC16391.1| nuclear RNA helicase [Ra ( 427) 1450 336.0 6.7e-90 gi|61212932|sp|O00148|DDX39_HUMAN ATP-dependent RN ( 427) 1449 335.7 7.8e-90 gi|10439505|dbj|BAB15509.1| unnamed protein produc ( 461) 1447 335.3 1.1e-89 gi|1905998|gb|AAB50231.1| nuclear RNA helicase [Ho ( 427) 1440 333.7 3.2e-89 gi|122890544|emb|CAM14114.1| DEAD (Asp-Glu-Ala-Asp ( 244) 1434 332.2 5.3e-89 gi|122890545|emb|CAM14115.1| DEAD (Asp-Glu-Ala-Asp ( 427) 1434 332.3 8.2e-89 gi|47940414|gb|AAH71505.1| Ddx39a protein [Danio r ( 427) 1429 331.2 1.8e-88 gi|52695645|pdb|1T6N|A Chain A, Crystal Structure ( 220) 1414 327.6 1.1e-87 gi|28278799|gb|AAH45239.1| MGC53693 protein [Xenop ( 427) 1407 326.2 5.6e-87 gi|28280049|gb|AAH45125.1| Ddx39-prov protein [Xen ( 427) 1404 325.6 8.9e-87 gi|89271292|emb|CAJ82673.1| DEAD (Asp-Glu-Ala-Asp) ( 427) 1403 325.3 1e-86 gi|156222551|gb|EDO43394.1| predicted protein [Nem ( 429) 1401 324.9 1.4e-86 >>gi|62088014|dbj|BAD92454.1| HLA-B associated transcrip (310 aa) initn: 2092 init1: 2092 opt: 2092 Z-score: 2554.3 bits: 480.8 E(): 1.2e-133 Smith-Waterman score: 2092; 100.000% identity (100.000% similar) in 310 aa overlap (1-310:1-310) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 50 60 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 70 80 90 100 110 120 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 130 140 150 160 170 180 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 190 200 210 220 230 240 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA 250 260 270 280 290 300 310 fj1120 ACAQLGVMTP :::::::::: gi|620 ACAQLGVMTP 310 >>gi|119623817|gb|EAX03412.1| hCG2005638, isoform CRA_d (290 aa) initn: 1938 init1: 1938 opt: 1938 Z-score: 2366.9 bits: 446.0 E(): 3.4e-123 Smith-Waterman score: 1938; 100.000% identity (100.000% similar) in 290 aa overlap (21-310:1-290) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|119 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA 230 240 250 260 270 280 310 fj1120 ACAQLGVMTP :::::::::: gi|119 ACAQLGVMTP 290 >>gi|74142931|dbj|BAE42496.1| unnamed protein product [M (324 aa) initn: 1781 init1: 1781 opt: 1781 Z-score: 2174.7 bits: 410.6 E(): 1.7e-112 Smith-Waterman score: 1781; 98.162% identity (99.632% similar) in 272 aa overlap (21-292:1-272) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::.::.::::::::::::: gi|741 MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA :::::::::::::::::::::::::::::::::::::::::::.:::::. : gi|741 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPLLALFLQTPLSFKHQEG 230 240 250 260 270 280 310 fj1120 ACAQLGVMTP gi|741 SLCPSGSNNSLKKNTEAETVSDRVCACQGNSGRLGRVNVRAGSV 290 300 310 320 >>gi|123270967|emb|CAI18282.2| HLA-B associated transcri (289 aa) initn: 1628 init1: 1628 opt: 1628 Z-score: 1988.7 bits: 376.0 E(): 4e-102 Smith-Waterman score: 1628; 100.000% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|123 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|123 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 >>gi|123270965|emb|CAI18284.2| HLA-B associated transcri (425 aa) initn: 1628 init1: 1628 opt: 1628 Z-score: 1986.4 bits: 376.1 E(): 5.3e-102 Smith-Waterman score: 1628; 100.000% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|123 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|123 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 >>gi|61217531|sp|Q5RE47.1|UAP56_PONAB Spliceosome RNA he (428 aa) initn: 1628 init1: 1628 opt: 1628 Z-score: 1986.3 bits: 376.1 E(): 5.4e-102 Smith-Waterman score: 1628; 100.000% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|612 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|612 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 >>gi|62897383|dbj|BAD96632.1| HLA-B associated transcrip (428 aa) initn: 1628 init1: 1628 opt: 1628 Z-score: 1986.3 bits: 376.1 E(): 5.4e-102 Smith-Waterman score: 1628; 100.000% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|628 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|628 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 >>gi|30585031|gb|AAP36788.1| Homo sapiens HLA-B associat (429 aa) initn: 1628 init1: 1628 opt: 1628 Z-score: 1986.3 bits: 376.1 E(): 5.4e-102 Smith-Waterman score: 1628; 100.000% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|305 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|305 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 >>gi|156602043|gb|ABU86917.1| Bat1 [Ornithorhynchus anat (451 aa) initn: 1628 init1: 1628 opt: 1628 Z-score: 1986.0 bits: 376.2 E(): 5.6e-102 Smith-Waterman score: 1628; 100.000% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|156 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|156 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|156 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|156 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|156 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 >>gi|122140442|sp|Q3T147|UAP56_BOVIN Spliceosome RNA hel (428 aa) initn: 1622 init1: 1622 opt: 1622 Z-score: 1979.0 bits: 374.8 E(): 1.4e-101 Smith-Waterman score: 1622; 99.592% identity (100.000% similar) in 245 aa overlap (21-265:1-245) 10 20 30 40 50 60 fj1120 RQISLLRRCCCRHTRSPCLVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV :::::::::::::::::::::::::::::::::::::::: gi|122 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYV 10 20 30 40 70 80 90 100 110 120 fj1120 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 50 60 70 80 90 100 130 140 150 160 170 180 fj1120 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|122 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEV 110 120 130 140 150 160 190 200 210 220 230 240 fj1120 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 170 180 190 200 210 220 250 260 270 280 290 300 fj1120 EKQVMMFSATLSKEIRPVCRKFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKA ::::::::::::::::::::::::: gi|122 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 230 240 250 260 270 280 310 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 11:39:23 2008 done: Sun Aug 10 11:42:01 2008 Total Scan time: 740.290 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]