hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-11420252/chunk_1/iprscan-20080810-11420252.nocrc
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Query sequence: fj11209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                         202.2    1.1e-57   1
PF00270.19.fs DEAD/DEAH box helicase                         200.4    3.9e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1      89   258 ..     1   213 []   200.4  3.9e-57
PF00270.19.ls   1/1      89   258 ..     1   213 []   202.2  1.1e-57

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 89 to 258: score 200.4, E = 3.9e-57
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      +++Q e+ip+++ G+Dvl+qA+ G GKT++f+l+ lq+l +      
     fj11209    89    SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPvT---- 131  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                            + + +lv+++TreLa Qi +e +++ k+       + ++kv
     fj11209   132 ---------GQVSVLVMCHTRELAFQISKEYERFSKY-------MPNVKV 165  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   a+ +GG sik+++e+l  + k+     p+I+vgTPgr+l l        +
     fj11209   166 AVFFGGLSIKKDEEVL--K-KNC----PHIVVGTPGRILALA-------R 201  

                RF x xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   a.sldlknlkllVlDEAhrll.dmkGfgedleeilrrlprpklrrlsqdl
                   ++sl+lk++k ++lDE++ +l+     + d+ ei+r++p ++        
     fj11209   202 NkSLNLKHIKHFILDECDKMLeQL-DMRRDVQEIFRMTP-HE-------- 241  

                RF xxxxxxxxxxxxxxxxxxx   
                   pnrqtllfSATlprnvedl<-*
                     +q+++fSATl+++++ +   
     fj11209   242 --KQVMMFSATLSKEIRPV    258  

PF00270.19.ls: domain 1 of 1, from 89 to 258: score 202.2, E = 1.1e-57
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      +++Q e+ip+++ G+Dvl+qA+ G GKT++f+l+ lq+l +      
     fj11209    89    SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPvT---- 131  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                            + + +lv+++TreLa Qi +e +++ k+       + ++kv
     fj11209   132 ---------GQVSVLVMCHTRELAFQISKEYERFSKY-------MPNVKV 165  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   a+ +GG sik+++e+l  + k+     p+I+vgTPgr+l l        +
     fj11209   166 AVFFGGLSIKKDEEVL--K-KNC----PHIVVGTPGRILALA-------R 201  

                RF x xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   a.sldlknlkllVlDEAhrll.dmkGfgedleeilrrlprpklrrlsqdl
                   ++sl+lk++k ++lDE++ +l+     + d+ ei+r++p ++        
     fj11209   202 NkSLNLKHIKHFILDECDKMLeQL-DMRRDVQEIFRMTP-HE-------- 241  

                RF xxxxxxxxxxxxxxxxxxx   
                   pnrqtllfSATlprnvedl<-*
                     +q+++fSATl+++++ +   
     fj11209   242 --KQVMMFSATLSKEIRPV    258  

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