hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-11420252/chunk_1/iprscan-20080810-11420252.nocrc
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Query sequence: fj11209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 187.4    1.3e-51   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      84   279 ..     1   219 []   187.4  1.3e-51

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 84 to 279: score 187.4, E = 1.3e-51
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      gf+ ++++Q e+ip ++ g+dv+ +a+ G GKT++f+l+ l++l + 
     fj11209    84    GFeHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV 130  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                           +  +vLv+++treLa Q+ +e +++ +++++     +kv+++
     fj11209   131 T-------GQVSVLVMCHTRELAFQISKEYERFSKYMPN-----VKVAVF 168  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                   +gG s+   k++++ lk+++++i+v+Tpgr+l l +n++ l+l++++++i
     fj11209   169 FGGlSI---KKDEEVLKKNCPHIVVGTPGRILALArNKS-LNLkHIKHFI 214  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eienll
                   lDE++++l+++     + ++++ ++++ +p+ +q++++SAT+++ei+  +
     fj11209   215 LDECDKMLEQL-----DMRRDVQeIFRMTPHEKQVMMFSATLSkEIRPVC 259  

                   klflnlpelfpnpvfisvgftlepieqf<-*
                   ++f++      ++ ++ ++  l+p++ +   
     fj11209   260 RKFMQ------DVNTLLPS--LPPLPAR    279  

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