hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-11475089/chunk_1/iprscan-20080810-11475089.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj11224 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 284.4 2e-82 1 PF00069.15.fs Protein kinase domain 282.5 7.3e-82 1 PF07714.7.fs Protein tyrosine kinase 99.2 1.1e-28 1 PF07714.7.ls Protein tyrosine kinase 91.6 2.3e-24 1 PF00786.18.fs P21-Rho-binding domain 74.0 2.1e-20 1 PF00786.18.ls P21-Rho-binding domain 76.0 1.1e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00786.18.fs 1/1 24 80 .. 1 60 [] 74.0 2.1e-20 PF00786.18.ls 1/1 24 80 .. 1 60 [] 76.0 1.1e-19 PF07714.7.fs 1/1 420 628 .. 1 233 [. 99.2 1.1e-28 PF00069.15.fs 1/1 420 671 .. 1 287 [] 282.5 7.3e-82 PF00069.15.ls 1/1 420 671 .. 1 287 [] 284.4 2e-82 PF07714.7.ls 1/1 420 671 .. 1 272 [] 91.6 2.3e-24 Alignments of top-scoring domains: PF00786.18.fs: domain 1 of 1, from 24 to 80: score 74.0, E = 2.1e-20 *->eIStPLtnFkHvvHVGfDgqtGfftGlPpeWekllkssgiskpeqkk eIS+P nF+H+vH+ fD+++G+f+GlPp+W+++l++ +p++ + fj11224 24 EISAP-QNFQHRVHTSFDPKEGKFVGLPPQWQNILDTL--RRPKPVV 67 npqavldvlkfys<-* +p++++ v+ ++ fj11224 68 DPSRITRVQLQPM 80 PF00786.18.ls: domain 1 of 1, from 24 to 80: score 76.0, E = 1.1e-19 *->eIStPLtnFkHvvHVGfDgqtGfftGlPpeWekllkssgiskpeqkk eIS+P nF+H+vH+ fD+++G+f+GlPp+W+++l++ +p++ + fj11224 24 EISAP-QNFQHRVHTSFDPKEGKFVGLPPQWQNILDTL--RRPKPVV 67 npqavldvlkfys<-* +p++++ v+ ++ fj11224 68 DPSRITRVQLQPM 80 PF07714.7.fs: domain 1 of 1, from 420 to 628: score 99.2, E = 1.1e-28 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie l k+GeG+ G V++++ k + + +VAVK++ + ++ fj11224 420 LDSYVKIGEGSTGIVCLAREK----HSGRQVAVKMM---DLRKQQ-- 457 redFlr.EAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r+++l +E+ iM+ + +H N+V ++ + ge l++ +E+ +gG fj11224 458 RRELLFnEVVIMRDY-QHFNVVEMYKSYLV-GEE----LWVLMEFLQGGA 501 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L d + +L+ +++ + + ++++YL++++ +HRD+ +L+ fj11224 502 LTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILL 547 senlvVKIsDFGLaRdiynddyYvrkkgggk.lPvkWmAPEslkygkFts + ++ VK sDFG + +i ++d + k ++ WmAPE+++ + + + fj11224 548 TLDGRVKLSDFGFCAQI-SKD---VPKRKSLvGTPYWMAPEVISRSLYAT 593 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyed<-* + D+WS G++ E++ Ge+P Y s+ + +++l +d fj11224 594 EVDIWSLGIMVIEMVD-GEPP-YFSDSPVQAMKRL-RD 628 PF00069.15.fs: domain 1 of 1, from 420 to 671: score 282.5, E = 7.3e-82 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + k+G+Gs G V++a++k +g++VAvK +++rk+ ++ +++ fj11224 420 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR--RELLFN 464 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E+ i++ +H N+v+++ ++ + +l++ +E+++gG L d++s fj11224 465 --EVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGG----ALTDIVS- 507 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv + +l e+++ ++ +l++l+YLH++g+iHRD+K++ ILl +g fj11224 508 ---QVRL--NEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGR 552 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD v K++DFG+++++ + ++ +++vGTp++mAPEv+ ++ y t+vD fj11224 553 V----KLSDFGFCAQI-SkDVPkRKSLVGTPYWMAPEVIS-RSLYATEVD 596 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +WSlG++++e++ G+pP+ ++ s++ ++++r +p+l+ + + fj11224 597 IWSLGIMVIEMVDGEPPYFSD---SpVQAMKRLRDSPPPKLKNSHKVS-- 641 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* + ++d+++++L +DP++R ta+e+l HP++ fj11224 642 -------------PVLRDFLERMLVRDPQERATAQELLDHPFL 671 PF00069.15.ls: domain 1 of 1, from 420 to 671: score 284.4, E = 2e-82 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + k+G+Gs G V++a++k +g++VAvK +++rk+ ++ +++ fj11224 420 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR--RELLFN 464 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E+ i++ +H N+v+++ ++ + +l++ +E+++gG L d++s fj11224 465 --EVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGG----ALTDIVS- 507 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv + +l e+++ ++ +l++l+YLH++g+iHRD+K++ ILl +g fj11224 508 ---QVRL--NEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGR 552 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD v K++DFG+++++ + ++ +++vGTp++mAPEv+ ++ y t+vD fj11224 553 V----KLSDFGFCAQI-SkDVPkRKSLVGTPYWMAPEVIS-RSLYATEVD 596 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +WSlG++++e++ G+pP+ ++ s++ ++++r +p+l+ + + fj11224 597 IWSLGIMVIEMVDGEPPYFSD---SpVQAMKRLRDSPPPKLKNSHKVS-- 641 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* + ++d+++++L +DP++R ta+e+l HP++ fj11224 642 -------------PVLRDFLERMLVRDPQERATAQELLDHPFL 671 PF07714.7.ls: domain 1 of 1, from 420 to 671: score 91.6, E = 2.3e-24 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie l k+GeG+ G V++++ k + + +VAVK++ + ++ fj11224 420 LDSYVKIGEGSTGIVCLAREK----HSGRQVAVKMM---DLRKQQ-- 457 redFlr.EAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r+++l +E+ iM+ + +H N+V ++ + ge l++ +E+ +gG fj11224 458 RRELLFnEVVIMRDY-QHFNVVEMYKSYLV-GEE----LWVLMEFLQGGA 501 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L d + +L+ +++ + + ++++YL++++ +HRD+ +L+ fj11224 502 LTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILL 547 senlvVKIsDFGLaRdiynddyYvrkkgggk.lPvkWmAPEslkygkFts + ++ VK sDFG + +i ++d + k ++ WmAPE+++ + + + fj11224 548 TLDGRVKLSDFGFCAQI-SKD---VPKRKSLvGTPYWMAPEVISRSLYAT 593 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyR..LprPenC + D+WS G++ E++ Ge+P Y s+ + +++l +d ++L+ ++ fj11224 594 EVDIWSLGIMVIEMVD-GEPP-YFSDSPVQAMKRL-RDSPPpkLKNSHKV 640 PdelYdlMlqCWaedPedRPtFsel..veeL<-* ++ l d + + +dP++R t +el ++ +L fj11224 641 SPVLRDFLERMLVRDPQERATAQELldHPFL 671 //