hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-11475089/chunk_1/iprscan-20080810-11475089.nocrc
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Query sequence: fj11224
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 314.2    9.4e-90   1
SM00219                                                  82.1    6.8e-20   1
SM00285                                                  52.0    7.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00285    1/1      25    60 ..     1    38 []    52.0  7.8e-11
SM00219    1/1     420   671 ..     1   280 []    82.1  6.8e-20
SM00220    1/1     420   671 ..     1   231 []   314.2  9.4e-90

Alignments of top-scoring domains:
SM00285: domain 1 of 1, from 25 to 60: score 52.0, E = 7.8e-11
                   *->IStPtGnFkHiaHVGPfDgatgeFtglptewesllkts<-*
                      IS+P  nF+H++H   fD+++g+F+glp++w+++l t    
     fj11224    25    ISAPQ-NFQHRVHTS-FDPKEGKFVGLPPQWQNILDTL    60   

SM00219: domain 1 of 1, from 420 to 671: score 82.1, E = 6.8e-20
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                      l    k+GeG  G+V++++ k+++++VAVK++   +++++e + +E 
     fj11224   420    LDSYVKIGEGSTGIVCLAREKhsgRQVAVKMMDLRKqqrRELLFNEV 466  

                   kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr
                    iM+ +  +H N+V ++   + +       e l+++mE+  gG+L d   
     fj11224   467 VIMRDY--QHFNVVEMYKSYLVG-------EELWVLMEFLQGGALTDIVS 507  

                   knrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKI
                     r  l+ ++    +  + +  +YL+ ++++HRD+    +L++ +++vK 
     fj11224   508 QVR--LNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKL 555  

                   sDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFt
                   sDFG +  +  d         +rk+   g+       WmAPE++  + + 
     fj11224   556 SDFGFCAQISKD-------VPKRKSL-VGTP-----YWMAPEVISRSLYA 592  

                   skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPe
                   ++ D+WS G++  E+  +Ge+PY        s+ +++++l++    p+P+
     fj11224   593 TEVDIWSLGIMVIEMV-DGEPPYFS-----DSPVQAMKRLRDS---PPPK 633  

                   ndlpiSs..vtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                          ++   ++ l d  ++   +dP +R t +el ++ +l   
     fj11224   634 L-----KnsHKVSPVLRDFLERMLVRDPQERATAQELldHPFL    671  

SM00220: domain 1 of 1, from 420 to 671: score 314.2, E = 9.4e-90
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                       +   k+G+G+ G V+lar+k++gr+vA+K+++ ++++++e + +E+
     fj11224   420    LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDlrkqqrrELLFNEV 466  

                   kiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrgl
                    i++  +H N+V +y ++  +++l++ mE++ G  G L d+  + +    
     fj11224   467 VIMRDyQHFNVVEMYKSYLVgEELWVLMEFLQG--GALTDIVSQVR---- 510  

                   rkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaD
                      l+E++++ ++  +l+aL+YLH qg+iHRD+K + iLL+ +++vKl+D
     fj11224   511 ---LNEeQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLdgRVKLSD 557  

                   FGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   FG+++q++++ ++++++vGTp++mAPEv++++ Y + +vDiWSlG++++E
     fj11224   558 FGFCAQIskdvpkrKSLVGTPYWMAPEVIsrsLYAT-EVDIWSLGIMVIE 606  

                   lltGkpPFp..qldlifkkig.............SpeakdLikklLvkdP
                   ++ G+pP+ ++ + + +k+++++++++ +++++ Sp ++d+++++Lv+dP
     fj11224   607 MVDGEPPYFsdSPVQAMKRLRdspppklknshkvSPVLRDFLERMLVRDP 656  

                   ekRlta.eaLedeldikaHPff<-*
                   ++R ta+e+L        HPf+   
     fj11224   657 QERATAqELLD-------HPFL    671  

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