hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-11541812/chunk_1/iprscan-20080810-11541812.nocrc
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Query sequence: fj11242
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04046.7.ls PSP                                             96.7    6.4e-26   1
PF04046.7.fs PSP                                             94.8    2.4e-25   1
PF00098.13.fs Zinc knuckle                                    27.5    1.7e-06   1
PF00098.13.ls Zinc knuckle                                    29.5    1.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00098.13.fs   1/1       6    23 ..     1    18 []    27.5  1.7e-06
PF00098.13.ls   1/1       6    23 ..     1    18 []    29.5  1.1e-05
PF04046.7.fs   1/1      66   114 ..     1    54 []    94.8  2.4e-25
PF04046.7.ls   1/1      66   114 ..     1    54 []    96.7  6.4e-26

Alignments of top-scoring domains:
PF00098.13.fs: domain 1 of 1, from 6 to 23: score 27.5, E = 1.7e-06
                   *->rkCynCGkpGHiardCpk<-*
                      + C+nCG + H+++dCp    
     fj11242     6    PHCFNCGSEEHQMKDCPM    23   

PF00098.13.ls: domain 1 of 1, from 6 to 23: score 29.5, E = 1.1e-05
                   *->rkCynCGkpGHiardCpk<-*
                      + C+nCG + H+++dCp    
     fj11242     6    PHCFNCGSEEHQMKDCPM    23   

PF04046.7.fs: domain 1 of 1, from 66 to 114: score 94.8, E = 2.4e-25
                   *->KPGriSdeLReaLGlpeGkdpPPWlyrMrrlGlidGyPPGYLpelki
                      KPG+iS+eL++aLG+++ k++PP++yrMr+l    GyPPG+L+e+++
     fj11242    66    KPGVISEELQDALGVTD-KSLPPFIYRMRQL----GYPPGWLKEAEL 107  

                   pglnapi<-*
                   +++++++   
     fj11242   108 ENSGLAL    114  

PF04046.7.ls: domain 1 of 1, from 66 to 114: score 96.7, E = 6.4e-26
                   *->KPGriSdeLReaLGlpeGkdpPPWlyrMrrlGlidGyPPGYLpelki
                      KPG+iS+eL++aLG+++ k++PP++yrMr+l    GyPPG+L+e+++
     fj11242    66    KPGVISEELQDALGVTD-KSLPPFIYRMRQL----GYPPGWLKEAEL 107  

                   pglnapi<-*
                   +++++++   
     fj11242   108 ENSGLAL    114  

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