hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-11541812/chunk_1/iprscan-20080810-11541812.nocrc
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Query sequence: fj11242
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00581                                                 106.6    2.8e-27   1
SM00343                                                  26.8      0.003   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00343      1/1       7    23 ..     1    17 []    26.8    0.003
SM00581      1/1      62   114 ..     1    62 []   106.6  2.8e-27

Alignments of top-scoring domains:
SM00343: domain 1 of 1, from 7 to 23: score 26.8, E = 0.003
                   *->kCynCGkeGHiardCpk<-*
                       C+nCG+e H+++dCp    
     fj11242     7    HCFNCGSEEHQMKDCPM    23   

SM00581: domain 1 of 1, from 62 to 114: score 106.6, E = 2.8e-27
                   *->vkhfkPGrISdeLReALGlpegnafkqlPpWlyrMrrlGlidGyPPg
                      +++fkPG+IS+eL++ALG++++    +lPp++yrMr+lG    yPPg
     fj11242    62    FGRFKPGVISEELQDALGVTDK----SLPPFIYRMRQLG----YPPG 100  

                   YprlkIkglnapipl<-*
                   ++ ++++++n++++l   
     fj11242   101 WL-KEAELENSGLAL    114  

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