hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-12063551/chunk_1/iprscan-20080810-12063551.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj11313
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.fs Protein kinase domain                       129.6    1.1e-36   1
PF00069.15.ls Protein kinase domain                        51.8    2.1e-12   1
PF07714.7.fs Protein tyrosine kinase                      33.0    1.7e-09   2
PF00226.21.fs DnaJ domain                                  22.0    6.2e-06   1
PF00226.21.ls DnaJ domain                                  -4.3      0.011   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1       1   209 [.     1   287 []    51.8  2.1e-12
PF07714.7.fs   1/2      11    89 ..    82   158 ..    31.2  5.9e-09
PF00069.15.fs   1/1      14   209 ..    74   287 .]   129.6  1.1e-36
PF00226.21.ls   1/1    1122  1196 .]     1    76 []    -4.3    0.011
PF00226.21.fs   1/1    1146  1185 ..    15    64 ..    22.0  6.2e-06

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 1 to 209: score 51.8, E = 2.1e-12
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                           + g         k++ + ++      
     fj11313     1    --------------------ASIG---------KEESDTGQ------ 12   

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                                             +  l +E+c g   + +    +  
     fj11313    13 -------------------------AEFLLLTELCKGQ--LVEFLKKME- 34   

                   trrkgpllfsedeakkialQilrgleYLHsn..giiHRDLKPeNILldnn
                     ++gpl  s d++ ki++Q++r+++++H++++ iiHRDLK eN+Ll+n+
     fj11313    35 --SRGPL--SCDTVLKIFYQTCRAVQHMHRQkpPIIHRDLKVENLLLSNQ 80   

                   gvvdaflKiaDFGlAkkls...........t.sss.lttfvGTpwYmAPE
                   g++    K++DFG+A  +s+ ++ + + ++    ++  t+  Tp Y+ PE
     fj11313    81 GTI----KLCDFGSATTIShypdyswsaqrRaLVEeEITRNTTPMYRTPE 126  

                   vll..ggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki
                   ++   ++ ++g k D+W+lG+ily l++++ PF +        l ++  +
     fj11313   127 IIDlySNFPIGEKQDIWALGCILYLLCFRQHPFEDG-----AKLRIVNGK 171  

                   lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaee
                    + p++   +                   + +Li+ +L+++P++Rl+++e
     fj11313   172 YSIPPHDTQY-----------------TVFHSLIRAMLQVNPEERLSIAE 204  

                   ilqHPwf<-*
                   +++   +   
     fj11313   205 VVHQ--L    209  

PF07714.7.fs: domain 1 of 2, from 11 to 89: score 31.2, E = 5.9e-09
                   *->gpg.lyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMe
                      g ++ ++ tE+++g  L +fL+k  +++pL+  + l++ +Q +++ +
     fj11313    11    GQAeFLLLTELCKG-QLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQ 56   

                   YLeskn..fvHRDLAARNcLVsenlvVKIsDFG<-*
                   + ++++++++HRDL   N L+s+++++K +DFG   
     fj11313    57 HMHRQKppIIHRDLKVENLLLSNQGTIKLCDFG    89   

PF00069.15.fs: domain 1 of 1, from 14 to 209: score 129.6, E = 1.1e-36
                   *->hlylVlEycegGLrvldLfdylsetrrkgpllfsedeakkialQilr
                      +  l +E+c g   + +    +    ++gpl  s d++ ki++Q++r
     fj11313    14    EFLLLTELCKGQ--LVEFLKKME---SRGPL--SCDTVLKIFYQTCR 53   

                   gleYLHsn..giiHRDLKPeNILldnngvvdaflKiaDFGlAkkls....
                   +++++H++++ iiHRDLK eN+Ll+n+g++    K++DFG+A  +s+ ++
     fj11313    54 AVQHMHRQkpPIIHRDLKVENLLLSNQGTI----KLCDFGSATTIShypd 99   

                   .......t.sss.lttfvGTpwYmAPEvll..ggngygtkvDvWSlGvil
                    + + ++    ++  t+  Tp Y+ PE++   ++ ++g k D+W+lG+il
     fj11313   100 yswsaqrRaLVEeEITRNTTPMYRTPEIIDlySNFPIGEKQDIWALGCIL 149  

                   yelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsisrsefrrl
                   y l++++ PF +        l ++  + + p++   +             
     fj11313   150 YLLCFRQHPFEDG-----AKLRIVNGKYSIPPHDTQY------------- 181  

                   pnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                         + +Li+ +L+++P++Rl+++e+++   +   
     fj11313   182 ----TVFHSLIRAMLQVNPEERLSIAEVVHQ--L    209  

PF00226.21.ls: domain 1 of 1, from 1122 to 1196: score -4.3, E = 0.011
                   *->dyYeiL..Gvpr........dAsdeeIKKAYRkLAlkyHPDKNpgdp
                      ++  +L +G +r ++ +  +    e++KK YR+ +l +HPDK  g p
     fj11313  1122    TLHTVLwdGESRwtpvgmadLVAPEQVKKHYRRAVLAVHPDKAAGQP 1168 

                   eerktneraeskeeAeekFkeineAYevLSDpekRaiYD<-*
                               + A+  F+e+n A++   +   R ++    
     fj11313  1169 ----------YEQHAKMIFMELNDAWSEFENQGSRPLF-    1196 

PF00226.21.fs: domain 1 of 1, from 1146 to 1185: score 22.0, E = 6.2e-06
                   *->eeIKKAYRkLAlkyHPDKNpgdpeerktneraeskeeAeekFkeine
                      e++KK YR+ +l +HPDK  g p            + A+  F+e+n 
     fj11313  1146    EQVKKHYRRAVLAVHPDKAAGQP----------YEQHAKMIFMELND 1182 

                   AYe<-*
                   A++   
     fj11313  1183 AWS    1185 

//