hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-12063551/chunk_1/iprscan-20080810-12063551.nocrc
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Query sequence: fj11313
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  53.0    4.8e-13   1
SM00219                                                -103.6     0.0001   1
SM00271                                                  29.9    0.00036   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1       3   213 ..     1   231 []    53.0  4.8e-13
SM00219    1/1       5   209 ..     1   280 []  -103.6   0.0001
SM00271    1/1    1131  1192 ..     1    72 []    29.9  0.00036

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 3 to 213: score 53.0, E = 4.8e-13
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH
                                       +++ +                         
     fj11313     3    ----------------IGKEES------------------------- 8    

                   PNIVkLydvfed..dklylVmEyceGdlGdLfdllkkrgrrglrkvlsE.
                             ++++ ++ l +E+c G    L ++lkk+ +rg+   ls +
     fj11313     9 ----------DTgqAEFLLLTELCKG---QLVEFLKKMESRGP---LSCd 42   

                   earfyfrQilsaLeYLHsq..gIiHRDLKPeNiLLds..hvKlaDFGlAr
                   ++ ++f+Q+++a++++H+q++ IiHRDLK eN+LL++++++Kl+DFG+A+
     fj11313    43 TVLKIFYQTCRAVQHMHRQkpPIIHRDLKVENLLLSNqgTIKLCDFGSAT 92   

                   ql...................ttfvGTpeYmAPEvl......gYgkpavD
                    +++ ++ + + +++   +++ t   Tp Y+ PE+++  ++ + g  + D
     fj11313    93 TIshypdyswsaqrralveeeITRNTTPMYRTPEIIdlysnfPIGE-KQD 141  

                   iWSlGcilyElltGkpPFp..qldlifkkig........SpeakdLikkl
                   iW+lGcily l+ ++ PF+++   +i +   + +++++    + +Li+ +
     fj11313   142 IWALGCILYLLCFRQHPFEdgAKLRIVNGKYsipphdtqYTVFHSLIRAM 191  

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   L+++Pe+Rl++ e+ +      + +     
     fj11313   192 LQVNPEERLSIaEVVH-----QLQEIA    213  

SM00219: domain 1 of 1, from 5 to 209: score -103.6, E = 0.0001
                   *->ltlgkkLGeGaFGeVykGtlkieVAVKtLkeda...keeFlrEakiM
                                                   ke+++++++eFl    ++
     fj11313     5    -----------------------------KEESdtgQAEFL----LL 18   

                   kklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrknr
                   ++l                                  ++G L ++L+k +
     fj11313    19 TEL----------------------------------CKGQLVEFLKKME 34   

                   pk..lslsdLlsfAlQIAkGMeYLesk..nfvHRDLAARNcLvgenkvvK
                    +++ls ++ l++ +Q ++  ++ ++++++++HRDL   N L+++++++K
     fj11313    35 SRgpLSCDTVLKIFYQTCRAVQHMHRQkpPIIHRDLKVENLLLSNQGTIK 84   

                   IsDFGLsRdlyddDkkG...........eskdyYrkkggkggktllPirW
                    +DFG +  + ++    + + + +++  ++++  r ++    +t      
     fj11313    85 LCDFGSATTISHY---PdyswsaqrralVEEEITRNTT-PMYRT------ 124  

                   mAPEsl.kdgkF..tskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsnee
                     PE ++ ++ F+  +k D+W+ G  L+ ++ + + P ++          
     fj11313   125 --PEIIdLYSNFpiGEKQDIWALGCILY-LLCFRQHPFED---------G 162  

                   vleylkkGyRlpkPendlpiSsvtCPdelYd.lMlqCWaedPedRPtFse
                   +  ++ +G++  +P++            ++ +l++   + +Pe+R + +e
     fj11313   163 AKLRIVNGKYSIPPHD--------TQYTVFHsLIRAMLQVNPEERLSIAE 204  

                   lverl<-*
                   +v++l   
     fj11313   205 VVHQL    209  

SM00271: domain 1 of 1, from 1131 to 1192: score 29.9, E = 0.00036
                   *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe
                      +  +   G      ++++KK YR+ +l +HPDK  g p         
     fj11313  1131    ESRWTPVGMADLVAPEQVKKHYRRAVLAVHPDKAAGQPY-------- 1169 

                   eekeeAeekFkeIneAYevLsDpek<-*
                     +++A+  F+e+n A++   ++ +   
     fj11313  1170 --EQHAKMIFMELNDAWSEFENQGS    1192 

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