# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj12036.fasta.nr -Q fj12036.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj12036, 676 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842102 sequences Expectation_n fit: rho(ln(x))= 5.3821+/-0.000189; mu= 11.4440+/- 0.011 mean_var=80.8757+/-15.996, 0's: 35 Z-trim: 36 B-trim: 2724 in 2/64 Lambda= 0.142615 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|119627137|gb|EAX06732.1| transmembrane protein ( 776) 4513 938.7 0 gi|97180263|sp|Q9BTX1|NDC1_HUMAN Nucleoporin NDC1 ( 674) 4503 936.6 0 gi|13111786|gb|AAH03082.1| Transmembrane protein 4 ( 674) 4494 934.7 0 gi|7688174|emb|CAB89726.1| hypothetical protein [H ( 673) 4486 933.1 0 gi|114556701|ref|XP_513417.2| PREDICTED: hypotheti ( 776) 4467 929.2 0 gi|75042098|sp|Q5RBY5.1|NDC1_PONAB Nucleoporin NDC ( 674) 4436 922.8 0 gi|149693606|ref|XP_001489103.1| PREDICTED: transm ( 674) 4164 866.8 0 gi|119890182|ref|XP_873174.2| PREDICTED: similar t ( 777) 4150 864.0 0 gi|81891316|sp|Q6AXN4|NDC1_RAT Nucleoporin NDC1 (T ( 673) 3977 828.3 0 gi|81901844|sp|Q8VCB1|NDC1_MOUSE Nucleoporin NDC1 ( 673) 3955 823.8 0 gi|119627136|gb|EAX06731.1| transmembrane protein ( 559) 3738 779.1 0 gi|194385620|dbj|BAG61017.1| unnamed protein produ ( 559) 3735 778.5 0 gi|194379026|dbj|BAG58064.1| unnamed protein produ ( 634) 3614 753.6 4e-215 gi|149035751|gb|EDL90432.1| hypothetical protein L ( 604) 3519 734.1 3e-209 gi|109020329|ref|XP_001091911.1| PREDICTED: simila ( 530) 3503 730.7 2.6e-208 gi|119627138|gb|EAX06733.1| transmembrane protein ( 644) 3450 719.9 5.8e-205 gi|7688172|emb|CAB89725.1| hypothetical protein [H ( 542) 3440 717.8 2.1e-204 gi|126343392|ref|XP_001380872.1| PREDICTED: simila ( 700) 3300 689.1 1.2e-195 gi|118094679|ref|XP_001235442.1| PREDICTED: simila ( 684) 3136 655.3 1.7e-185 gi|116284301|gb|AAI23980.1| Transmembrane protein ( 664) 2557 536.2 1.2e-149 gi|82181884|sp|Q6AX31|NDC1_XENLA Nucleoporin NDC1 ( 660) 2551 534.9 2.9e-149 gi|82187961|sp|Q7SZC5|NDC1_BRARE Nucleoporin NDC1 ( 671) 2410 505.9 1.6e-140 gi|169153973|emb|CAQ14060.1| transmembrane protein ( 671) 2393 502.4 1.8e-139 gi|194381020|dbj|BAG64078.1| unnamed protein produ ( 339) 2220 466.6 5.4e-129 gi|21749811|dbj|BAC03665.1| unnamed protein produc ( 312) 1169 250.3 6.4e-64 gi|115700002|ref|XP_784037.2| PREDICTED: similar t ( 756) 966 208.9 4.7e-51 gi|10434114|dbj|BAB14135.1| unnamed protein produc ( 135) 861 186.7 4e-45 gi|156226165|gb|EDO46977.1| predicted protein [Nem ( 585) 737 161.7 5.9e-37 gi|47223068|emb|CAG07155.1| unnamed protein produc ( 734) 723 158.8 5.2e-36 gi|149536842|ref|XP_001518195.1| PREDICTED: hypoth ( 431) 608 135.0 4.5e-29 gi|115636849|ref|XP_001194679.1| PREDICTED: simila ( 319) 496 111.9 3.1e-22 gi|108879465|gb|EAT43690.1| conserved hypothetical ( 577) 494 111.7 6.5e-22 gi|167881246|gb|EDS44629.1| conserved hypothetical ( 440) 426 97.6 8.7e-18 gi|193290166|ref|NP_001123269.1| nucleoporin Ndc1 ( 580) 422 96.8 1.9e-17 gi|157017395|gb|EAA09030.4| AGAP004558-PA [Anophel ( 583) 396 91.5 7.7e-16 gi|97180262|sp|Q298S5|NDC1_DROPS Nucleoporin Ndc1 ( 579) 308 73.4 2.2e-10 gi|194102493|gb|EDW24536.1| GL24200 [Drosophila pe ( 579) 301 71.9 5.9e-10 gi|194200547|gb|EDX14123.1| GD21044 [Drosophila si ( 579) 291 69.9 2.5e-09 gi|189234636|ref|XP_001815911.1| PREDICTED: simila (1018) 266 64.9 1.3e-07 gi|193892709|gb|EDV91575.1| GH13245 [Drosophila gr ( 578) 260 63.5 2e-07 gi|97180261|sp|Q60M68|NDC1_CAEBR Nucleoporin ndc-1 ( 587) 236 58.6 6.3e-06 gi|116503697|gb|EAU86592.1| predicted protein [Cop ( 906) 235 58.5 1e-05 gi|75015300|sp|Q8I4N3|NDC1_CAEEL Nucleoporin ndc-1 ( 588) 232 57.8 1.1e-05 gi|187021143|emb|CAP39725.1| Hypothetical protein (1288) 236 58.8 1.2e-05 gi|158595040|gb|EDP33616.1| hypothetical protein B ( 564) 211 53.4 0.00022 gi|194152451|gb|EDW67885.1| GJ24406 [Drosophila vi ( 580) 191 49.3 0.0038 gi|194168098|gb|EDW82999.1| GK22549 [Drosophila wi ( 580) 189 48.9 0.0051 >>gi|119627137|gb|EAX06732.1| transmembrane protein 48, (776 aa) initn: 4513 init1: 4513 opt: 4513 Z-score: 5015.7 bits: 938.7 E(): 0 Smith-Waterman score: 4513; 100.000% identity (100.000% similar) in 676 aa overlap (1-676:101-776) 10 20 30 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVAS :::::::::::::::::::::::::::::: gi|119 PAGSSWGLPAFELRWRAGARSPVRPRLGAAISMATAVSRPCAGRSRDILWRVLGWRIVAS 80 90 100 110 120 130 40 50 60 70 80 90 fj1203 IVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN 140 150 160 170 180 190 100 110 120 130 140 150 fj1203 VEFYAVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VEFYAVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCT 200 210 220 230 240 250 160 170 180 190 200 210 fj1203 GTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRS 260 270 280 290 300 310 220 230 240 250 260 270 fj1203 LLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLS 320 330 340 350 360 370 280 290 300 310 320 330 fj1203 LLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIK 380 390 400 410 420 430 340 350 360 370 380 390 fj1203 YLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAA 440 450 460 470 480 490 400 410 420 430 440 450 fj1203 TNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFG 500 510 520 530 540 550 460 470 480 490 500 510 fj1203 TPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAE 560 570 580 590 600 610 520 530 540 550 560 570 fj1203 GKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGL 620 630 640 650 660 670 580 590 600 610 620 630 fj1203 SHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVDTSYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVDTSYK 680 690 700 710 720 730 640 650 660 670 fj1203 TLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE :::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE 740 750 760 770 >>gi|97180263|sp|Q9BTX1|NDC1_HUMAN Nucleoporin NDC1 (hND (674 aa) initn: 4503 init1: 4503 opt: 4503 Z-score: 5005.5 bits: 936.6 E(): 0 Smith-Waterman score: 4503; 100.000% identity (100.000% similar) in 674 aa overlap (3-676:1-674) 10 20 30 40 50 60 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL 10 20 30 40 50 70 80 90 100 110 120 fj1203 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS 60 70 80 90 100 110 130 140 150 160 170 180 fj1203 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY 120 130 140 150 160 170 190 200 210 220 230 240 fj1203 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP 180 190 200 210 220 230 250 260 270 280 290 300 fj1203 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA 240 250 260 270 280 290 310 320 330 340 350 360 fj1203 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH 300 310 320 330 340 350 370 380 390 400 410 420 fj1203 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS 360 370 380 390 400 410 430 440 450 460 470 480 fj1203 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI 420 430 440 450 460 470 490 500 510 520 530 540 fj1203 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL 480 490 500 510 520 530 550 560 570 580 590 600 fj1203 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL 540 550 560 570 580 590 610 620 630 640 650 660 fj1203 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|971 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA 600 610 620 630 640 650 670 fj1203 SAEHQKRLQQFLEFKE :::::::::::::::: gi|971 SAEHQKRLQQFLEFKE 660 670 >>gi|13111786|gb|AAH03082.1| Transmembrane protein 48 [H (674 aa) initn: 4494 init1: 4494 opt: 4494 Z-score: 4995.5 bits: 934.7 E(): 0 Smith-Waterman score: 4494; 99.852% identity (99.852% similar) in 674 aa overlap (3-676:1-674) 10 20 30 40 50 60 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL 10 20 30 40 50 70 80 90 100 110 120 fj1203 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS 60 70 80 90 100 110 130 140 150 160 170 180 fj1203 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|131 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSPAAQTCLNEYHLFFLLTGAFMGY 120 130 140 150 160 170 190 200 210 220 230 240 fj1203 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP 180 190 200 210 220 230 250 260 270 280 290 300 fj1203 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA 240 250 260 270 280 290 310 320 330 340 350 360 fj1203 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH 300 310 320 330 340 350 370 380 390 400 410 420 fj1203 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS 360 370 380 390 400 410 430 440 450 460 470 480 fj1203 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI 420 430 440 450 460 470 490 500 510 520 530 540 fj1203 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL 480 490 500 510 520 530 550 560 570 580 590 600 fj1203 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL 540 550 560 570 580 590 610 620 630 640 650 660 fj1203 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA 600 610 620 630 640 650 670 fj1203 SAEHQKRLQQFLEFKE :::::::::::::::: gi|131 SAEHQKRLQQFLEFKE 660 670 >>gi|7688174|emb|CAB89726.1| hypothetical protein [Homo (673 aa) initn: 3913 init1: 3913 opt: 4486 Z-score: 4986.6 bits: 933.1 E(): 0 Smith-Waterman score: 4486; 99.852% identity (99.852% similar) in 674 aa overlap (3-676:1-673) 10 20 30 40 50 60 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL 10 20 30 40 50 70 80 90 100 110 120 fj1203 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|768 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFY-VVPSIPCSRLALIGKIIHPQQLMHS 60 70 80 90 100 110 130 140 150 160 170 180 fj1203 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY 120 130 140 150 160 170 190 200 210 220 230 240 fj1203 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP 180 190 200 210 220 230 250 260 270 280 290 300 fj1203 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA 240 250 260 270 280 290 310 320 330 340 350 360 fj1203 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH 300 310 320 330 340 350 370 380 390 400 410 420 fj1203 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS 360 370 380 390 400 410 430 440 450 460 470 480 fj1203 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI 420 430 440 450 460 470 490 500 510 520 530 540 fj1203 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL 480 490 500 510 520 530 550 560 570 580 590 600 fj1203 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL 540 550 560 570 580 590 610 620 630 640 650 660 fj1203 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA 600 610 620 630 640 650 670 fj1203 SAEHQKRLQQFLEFKE :::::::::::::::: gi|768 SAEHQKRLQQFLEFKE 660 670 >>gi|114556701|ref|XP_513417.2| PREDICTED: hypothetical (776 aa) initn: 4467 init1: 4467 opt: 4467 Z-score: 4964.6 bits: 929.2 E(): 0 Smith-Waterman score: 4467; 98.965% identity (99.556% similar) in 676 aa overlap (1-676:101-776) 10 20 30 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVAS :::::::: ::::.:::::::::::::::: gi|114 PAGSSWGLPPFELRWRAGARSPVRPRLGTAISMATAVSGPCAGKSRDILWRVLGWRIVAS 80 90 100 110 120 130 40 50 60 70 80 90 fj1203 IVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN 140 150 160 170 180 190 100 110 120 130 140 150 fj1203 VEFYAVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VEFYAVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCT 200 210 220 230 240 250 160 170 180 190 200 210 fj1203 GTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|114 GTNSFGSPAAQTCLNEYHLFFLLAGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRS 260 270 280 290 300 310 220 230 240 250 260 270 fj1203 LLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLS 320 330 340 350 360 370 280 290 300 310 320 330 fj1203 LLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIK 380 390 400 410 420 430 340 350 360 370 380 390 fj1203 YLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAA 440 450 460 470 480 490 400 410 420 430 440 450 fj1203 TNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFG .:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|114 ANGRVSSSYPVEPKKLNSPEETTFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFG 500 510 520 530 540 550 460 470 480 490 500 510 fj1203 TPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAE :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|114 TPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNTSPSTSISAE 560 570 580 590 600 610 520 530 540 550 560 570 fj1203 GKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGL 620 630 640 650 660 670 580 590 600 610 620 630 fj1203 SHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVDTSYK ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|114 SHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRTSGSLVDTSYK 680 690 700 710 720 730 640 650 660 670 fj1203 TLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE :::::::::::::::::::::::::::::::::::::::::::::: gi|114 TLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE 740 750 760 770 >>gi|75042098|sp|Q5RBY5.1|NDC1_PONAB Nucleoporin NDC1 (T (674 aa) initn: 4436 init1: 4436 opt: 4436 Z-score: 4931.0 bits: 922.8 E(): 0 Smith-Waterman score: 4436; 98.071% identity (99.852% similar) in 674 aa overlap (3-676:1-674) 10 20 30 40 50 60 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL :::::: ::::::::::::::::::::::.::::.::::::::::::::::::::::: gi|750 MATAVSGPCAGRSRDILWRVLGWRIVASIIWSVLLLPICTTVFIIFSRIDLFHPIQWL 10 20 30 40 50 70 80 90 100 110 120 fj1203 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|750 SDSFSDLYSSYVIFYLLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS 60 70 80 90 100 110 130 140 150 160 170 180 fj1203 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY :::::::::::::::::::::::::::::::.:::::::::::::::::::::.::.::: gi|750 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGANSFGSPAAQTCLNEYHLFFLLAGALMGY 120 130 140 150 160 170 190 200 210 220 230 240 fj1203 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP 180 190 200 210 220 230 250 260 270 280 290 300 fj1203 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|750 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGAFLLTTWYVSWILFKIYATEA 240 250 260 270 280 290 310 320 330 340 350 360 fj1203 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|750 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLFSQYSPSRRQEVFSLSQPGGH 300 310 320 330 340 350 370 380 390 400 410 420 fj1203 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSS ::::::::::::::::::::::.:::::::::::::::::::::::::::::.::::::: gi|750 PHNWTAISRECLNLLNGMTQKLVLYQEAAATNGRVSSSYPVEPKKLNSPEETTFQTPKSS 360 370 380 390 400 410 430 440 450 460 470 480 fj1203 QMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLI :::::::::::::::::::::::.::::::::::::::::::::::::::.::::::::: gi|750 QMPRPSVPPLVKTSLFSSKLSTPEVVSPFGTPFGSSVMNRMAGIFDVNTCFGSPQSPQLI 420 430 440 450 460 470 490 500 510 520 530 540 fj1203 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVL 480 490 500 510 520 530 550 560 570 580 590 600 fj1203 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTL 540 550 560 570 580 590 610 620 630 640 650 660 fj1203 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 QEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQA 600 610 620 630 640 650 670 fj1203 SAEHQKRLQQFLEFKE :::::::::::::::: gi|750 SAEHQKRLQQFLEFKE 660 670 >>gi|149693606|ref|XP_001489103.1| PREDICTED: transmembr (674 aa) initn: 3444 init1: 3444 opt: 4164 Z-score: 4628.5 bits: 866.8 E(): 0 Smith-Waterman score: 4164; 91.556% identity (97.630% similar) in 675 aa overlap (3-676:1-674) 10 20 30 40 50 60 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWL ::::::::::: ::::::::::::::.:::::::.::::::::::.: :::::::::: gi|149 MATAVSRPCAGGSRDILWRVLGWRIVSSIVWSVLLLPICTTVFIILSSIDLFHPIQWL 10 20 30 40 50 70 80 90 100 110 120 fj1203 SDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHS ::::.::::::::::.:::::::.::::::.:::.::::.:::::::::::.:::::.:: gi|149 SDSFNDLYSSYVIFYLLLLSVVIVIISIFNLEFYTVVPSVPCSRLALIGKILHPQQLVHS 60 70 80 90 100 110 130 140 150 160 170 180 fj1203 FIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGY ::::::::.:::::::::.:.::::::::::..:. . .::::::::::::::.:::::: gi|149 FIHAAMGMMMAWCAAVITRGRYSFLVVPCTGAESLENHSAQTCLNEYHLFFLLAGAFMGY 120 130 140 150 160 170 190 200 210 220 230 240 fj1203 SYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIP :::::::.:::::::::::::::::::::::::::::::::::::.:::::.:::::.:: gi|149 SYSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLIRNFCIVYYFLGHIP 180 190 200 210 220 230 250 260 270 280 290 300 fj1203 KAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEA ::::.:::.:.:::: ::::::::::::::::::::::::::: ::: :::::::::::: gi|149 KAWIGTAMDLRIDEQFHRPLDTVSGLLNLSLLYHVWLCGVFLLMTWYSSWILFKIYATEA 240 250 260 270 280 290 310 320 330 340 350 360 fj1203 HVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH :.::::::::: :::::::::::::: ::::::::::::::::::::::::::::::::: gi|149 HLFPVQPPFAEESDECLPKVLNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGH 300 310 320 330 340 350 370 380 390 400 410 fj1203 PHNWTAISRECLNLLNGMTQKLILYQEAAATNGRV-SSSYPVEPKKLNSPEETAFQTPKS :::::::::::::::: :::::.:::::::::::: ::::::: :::: ::::.:::: : gi|149 PHNWTAISRECLNLLNDMTQKLVLYQEAAATNGRVLSSSYPVESKKLNCPEETTFQTPTS 360 370 380 390 400 410 420 430 440 450 460 470 fj1203 SQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQL .:::::::::::.:::::::::::::.::.:.::::.::::::::::::::::::::::: gi|149 NQMPRPSVPPLVRTSLFSSKLSTPDVASPLGSPFGSGVMNRMAGIFDVNTCYGSPQSPQL 420 430 440 450 460 470 480 490 500 510 520 530 fj1203 IRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRV .::::::::::::::::::::: :::..::::::.:::: :::::::::::::::::::: gi|149 VRRGPRLWTSASDQQMTEFSNP-PSTTVSAEGKTVRQPSGIYSWIQNKREQIKNFLSKRV 480 490 500 510 520 530 540 550 560 570 580 590 fj1203 LIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|149 LIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILSTLLT 540 550 560 570 580 590 600 610 620 630 640 650 fj1203 LQEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LQEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQ 600 610 620 630 640 650 660 670 fj1203 ASAEHQKRLQQFLEFKE ::::::::::::::::: gi|149 ASAEHQKRLQQFLEFKE 660 670 >>gi|119890182|ref|XP_873174.2| PREDICTED: similar to tr (777 aa) initn: 2426 init1: 2426 opt: 4150 Z-score: 4612.1 bits: 864.0 E(): 0 Smith-Waterman score: 4150; 90.842% identity (96.898% similar) in 677 aa overlap (1-676:101-777) 10 20 30 fj1203 ISMATAVSRPCAGRSRDILWRVLGWRIVAS :.:: :.:::: : ::::::::::::::.: gi|119 LMGPSGGLPPFELRWRAGSLYPAALRVGAAITMAPAASRPCPGGSRDILWRVLGWRIVTS 80 90 100 110 120 130 40 50 60 70 80 90 fj1203 IVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN ::::::.::::::::.::: ::::::::::: :: :::.::.:::.:::::::.:::::: gi|119 IVWSVLLLPICTTVFVIFSSIDLFHPIQWLSASFYDLYNSYIIFYLLLLSVVIVIISIFN 140 150 160 170 180 190 100 110 120 130 140 150 fj1203 VEFYAVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCT ::::.::::::::::::::::.:::::::::.::::::.:::::.:.:.::::::::::: gi|119 VEFYTVVPSIPCSRLALIGKILHPQQLMHSFMHAAMGMLMAWCATVMTKGQYSFLVVPCT 200 210 220 230 240 250 160 170 180 190 200 210 fj1203 GTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRS ::.:. :::. ::::::::::::.:::::::::::::.:::::::::::::::::::::: gi|119 GTESLDSPAVPTCLNEYHLFFLLAGAFMGYSYSLLYFINNMNYLPFPIIQQYKFLRFRRS 260 270 280 290 300 310 220 230 240 250 260 270 fj1203 LLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLS :::::::::::::::.:::::.:::::.::::::::::.:.:::. ::::::: :::::: gi|119 LLLLVKHSCVESLFLLRNFCIVYYFLGHIPKAWISTAMDLRIDERFHRPLDTVRGLLNLS 320 330 340 350 360 370 280 290 300 310 320 330 fj1203 LLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIK :::::::::::.: ::::::.:::: :::::.:::::::.: :::::::::::::: ::: gi|119 LLYHVWLCGVFVLMTWYVSWLLFKICATEAHLFPVQPPFSEDSDECLPKVLNSNPPLIIK 380 390 400 410 420 430 340 350 360 370 380 390 fj1203 YLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAA :::::::::::::::::::::::::::::::::::::::::::::: :::::.::::::: gi|119 YLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNDMTQKLVLYQEAAA 440 450 460 470 480 490 400 410 420 430 440 fj1203 TNGRV-SSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPF ::::: ::::::: :::::::::::::::::::::::.: :.::::::::::::::.::. gi|119 TNGRVMSSSYPVEAKKLNSPEETAFQTPKSSQMPRPSMPSLIKTSLFSSKLSTPDVASPL 500 510 520 530 540 550 450 460 470 480 490 500 fj1203 GTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISA ::::::::.::::::::::: ::::::::: ::::::::::::::::::::::::::::: gi|119 GTPFGSSVVNRMAGIFDVNTSYGSPQSPQLTRRGPRLWTSASDQQMTEFSNPSPSTSISA 560 570 580 590 600 610 510 520 530 540 550 560 fj1203 EGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEG ::::.:::.::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|119 EGKTVRQPNVIYSWIQNKREQVKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEG 620 630 640 650 660 670 570 580 590 600 610 620 fj1203 LSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVDTSY :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|119 LSHLVAASFTEDRFGVVQTTLPAILNTLLTLQESVDKYFKLPHASSKPPRISGSLVDTSY 680 690 700 710 720 730 630 640 650 660 670 fj1203 KTLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE ::::::::::::::::::::::::::::: ::::::::::::::::: gi|119 KTLRFAFRASLKTAIYRITTTFGEHLNAVPASAEHQKRLQQFLEFKE 740 750 760 770 >>gi|81891316|sp|Q6AXN4|NDC1_RAT Nucleoporin NDC1 (Trans (673 aa) initn: 2423 init1: 2423 opt: 3977 Z-score: 4420.6 bits: 828.3 E(): 0 Smith-Waterman score: 3977; 86.963% identity (95.407% similar) in 675 aa overlap (3-676:1-673) 10 20 30 40 50 fj1203 ISMATAVSRPCAGRS-RDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQW ::::.: :::: : :::::::::::::.:.:::::.::.: :.::.:: ::::::::: gi|818 MATAASGPCAGGSPRDILWRVLGWRIVTSVVWSVLLLPVCITAFIVFSSIDLFHPIQW 10 20 30 40 50 60 70 80 90 100 110 fj1203 LSDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMH ::::....::: ::::.:::.::::::::::::::.:::::: ::::::..:.::::: : gi|818 LSDSLNEFYSSQVIFYLLLLAVVIIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTH 60 70 80 90 100 110 120 130 140 150 160 170 fj1203 SFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMG :::::.:::..:::::..:.:: ::::::::.:. :::::::.:::::::::.::::: gi|818 SFIHAVMGMAVAWCAAIMTKGQSRSLVVPCTGTESLDSPAAQTCMNEYHLFFLLSGAFMG 120 130 140 150 160 170 180 190 200 210 220 230 fj1203 YSYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYI ::::::::.::::::::::::::::::::::::::::::::::::.::::::.:::.:.: gi|818 YSYSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHI 180 190 200 210 220 230 240 250 260 270 280 290 fj1203 PKAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATE ::::::::..:. :::.::::::..::::.:::::::::::::: :::.::::::::::: gi|818 PKAWISTALDLRTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLMTWYISWILFKIYATE 240 250 260 270 280 290 300 310 320 330 340 350 fj1203 AHVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGG :..::::::::: :::::::::::::: :::::::::::::::::::::::::::::::: gi|818 AYMFPVQPPFAEESDECLPKVLNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGG 300 310 320 330 340 350 360 370 380 390 400 410 fj1203 HPHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKS :::::::::::::.::: :::::.:::::::::::. ::: ::::.:.::::::::::: gi|818 HPHNWTAISRECLSLLNDMTQKLVLYQEAAATNGRMYSSYSVEPKRLSSPEETAFQTPKP 360 370 380 390 400 410 420 430 440 450 460 470 fj1203 SQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQL :::: :::::::::::: :::::: :::::::::::.:::::::::::: :::::::: gi|818 SQMP--SVPPLVKTSLFSPKLSTPDGSSPFGTPFGSSVVNRMAGIFDVNTCCGSPQSPQL 420 430 440 450 460 470 480 490 500 510 520 530 fj1203 IRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRV .:::::::: .::::.. ::::: .:..:::::.:::::.::::::::::::::::::: gi|818 VRRGPRLWTHTSDQQVSAVSNPSPCASVTAEGKTVRQPSVLYSWIQNKREQIKNFLSKRV 480 490 500 510 520 530 540 550 560 570 580 590 fj1203 LIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLT 540 550 560 570 580 590 600 610 620 630 640 650 fj1203 LQEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQ :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|818 LQEAVDKYFKLPHASSKPPRTSGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQ 600 610 620 630 640 650 660 670 fj1203 ASAEHQKRLQQFLEFKE ::::::::::::::::: gi|818 ASAEHQKRLQQFLEFKE 660 670 >>gi|81901844|sp|Q8VCB1|NDC1_MOUSE Nucleoporin NDC1 (Tra (673 aa) initn: 2426 init1: 2426 opt: 3955 Z-score: 4396.1 bits: 823.8 E(): 0 Smith-Waterman score: 3955; 87.111% identity (95.259% similar) in 675 aa overlap (3-676:1-673) 10 20 30 40 50 fj1203 ISMATAVSRPCAGRS-RDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQW ::::.: :::: : :::::::::::::.::::::..::.: :.::..: :.::::::: gi|819 MATAASGPCAGGSPRDILWRVLGWRIVTSIVWSVVLLPVCITAFIVLSSINLFHPIQW 10 20 30 40 50 60 70 80 90 100 110 fj1203 LSDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMH :::: .:.::: :::..:::.::::::::::::::.::::: ::::::..:.::::: : gi|819 LSDSCNDFYSSQVIFHLLLLAVVIIIISIFNVEFYTVVPSISGSRLALIARILHPQQLTH 60 70 80 90 100 110 120 130 140 150 160 170 fj1203 SFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMG :::::::::..:::::..:.:::: ::::::::.:. :::::::::::::::::.::::: gi|819 SFIHAAMGMAVAWCAAIMTKGQYSSLVVPCTGTESLDSPAAQTCLNEYHLFFLLSGAFMG 120 130 140 150 160 170 180 190 200 210 220 230 fj1203 YSYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYI ::::::::.::::::::::::::::::::::::::::::::::::.::::::.:::.:.: gi|819 YSYSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHI 180 190 200 210 220 230 240 250 260 270 280 290 fj1203 PKAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATE ::::::::..:: :::.::::::..::::.::::::::::::::.::: ::::::::::: gi|819 PKAWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLVTWYSSWILFKIYATE 240 250 260 270 280 290 300 310 320 330 340 350 fj1203 AHVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGG ::::::::::::.:::::::::::::: :.:::::::::::::::::::::::::::::: gi|819 AHVFPVQPPFAEASDECLPKVLNSNPPRIVKYLALQDLMLLSQYSPSRRQEVFSLSQPGG 300 310 320 330 340 350 360 370 380 390 400 410 fj1203 HPHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKS ::::::::::::::::: :::::.:::::::::::. ::: ::::::.: ::::::::: gi|819 HPHNWTAISRECLNLLNDMTQKLVLYQEAAATNGRMYSSYSVEPKKLSSAEETAFQTPKP 360 370 380 390 400 410 420 430 440 450 460 470 fj1203 SQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQL :: : :::::::::::: :::::.: :::::::::::.::::::.::: :::::::: gi|819 SQTP--SVPPLVKTSLFSPKLSTPNVSSPFGTPFGSSVVNRMAGILDVNPFSGSPQSPQL 420 430 440 450 460 470 480 490 500 510 520 530 fj1203 IRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRV ::::::::: .::::.. .::::: .:..:::::.::::::::::::::::::::::::: gi|819 IRRGPRLWTHTSDQQVSAISNPSPCASVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRV 480 490 500 510 520 530 540 550 560 570 580 590 fj1203 LIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|819 LIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILHTLLT 540 550 560 570 580 590 600 610 620 630 640 650 fj1203 LQEAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQ :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|819 LQEAVDKYFKLPHASSKPPRASGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQ 600 610 620 630 640 650 660 670 fj1203 ASAEHQKRLQQFLEFKE ::::::::::::::::: gi|819 ASAEHQKRLQQFLEFKE 660 670 676 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 12:17:21 2008 done: Sun Aug 10 12:19:31 2008 Total Scan time: 965.120 Total Display time: 0.290 Function used was FASTA [version 34.26.5 April 26, 2007]